Protein–RNA interactions for Protein: G3UXB3

Nkx1-1, NK1 homeobox 1, mousemouse

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx1-1G3UXB3 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Nkx1-1G3UXB3 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Nkx1-1G3UXB3 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC31.42■■■□□ 2.62
Nkx1-1G3UXB3 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC31.41■■■□□ 2.62
Nkx1-1G3UXB3 Peli2-204ENSMUST00000226513 1320 ntBASIC31.4■■■□□ 2.62
Nkx1-1G3UXB3 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC31.38■■■□□ 2.61
Nkx1-1G3UXB3 Gm9939-201ENSMUST00000067161 1154 ntBASIC31.38■■■□□ 2.61
Nkx1-1G3UXB3 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Nkx1-1G3UXB3 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Nkx1-1G3UXB3 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Nkx1-1G3UXB3 Gm8503-201ENSMUST00000118131 455 ntBASIC31.3■■■□□ 2.6
Nkx1-1G3UXB3 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC31.29■■■□□ 2.6
Nkx1-1G3UXB3 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
Nkx1-1G3UXB3 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Nkx1-1G3UXB3 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Nkx1-1G3UXB3 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Nkx1-1G3UXB3 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
Nkx1-1G3UXB3 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
Nkx1-1G3UXB3 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC31.16■■■□□ 2.58
Nkx1-1G3UXB3 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC31.16■■■□□ 2.58
Nkx1-1G3UXB3 Gm6821-201ENSMUST00000107540 542 ntBASIC31.09■■■□□ 2.57
Nkx1-1G3UXB3 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
Nkx1-1G3UXB3 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
Nkx1-1G3UXB3 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC31■■■□□ 2.55
Nkx1-1G3UXB3 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC30.99■■■□□ 2.55
Nkx1-1G3UXB3 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
Nkx1-1G3UXB3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
Nkx1-1G3UXB3 Psd-208ENSMUST00000224556 2034 ntBASIC30.97■■■□□ 2.55
Nkx1-1G3UXB3 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
Nkx1-1G3UXB3 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC30.93■■■□□ 2.54
Nkx1-1G3UXB3 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC30.91■■■□□ 2.54
Nkx1-1G3UXB3 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC30.91■■■□□ 2.54
Nkx1-1G3UXB3 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC30.9■■■□□ 2.54
Nkx1-1G3UXB3 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
Nkx1-1G3UXB3 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
Nkx1-1G3UXB3 Gm24970-201ENSMUST00000175582 82 ntBASIC30.88■■■□□ 2.53
Nkx1-1G3UXB3 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
Nkx1-1G3UXB3 Gm15039-201ENSMUST00000118914 875 ntBASIC30.86■■■□□ 2.53
Nkx1-1G3UXB3 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC30.86■■■□□ 2.53
Nkx1-1G3UXB3 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Nkx1-1G3UXB3 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Nkx1-1G3UXB3 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Nkx1-1G3UXB3 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC30.81■■■□□ 2.52
Nkx1-1G3UXB3 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Nkx1-1G3UXB3 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
Nkx1-1G3UXB3 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC30.7■■■□□ 2.51
Nkx1-1G3UXB3 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC30.7■■■□□ 2.51
Nkx1-1G3UXB3 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC30.7■■■□□ 2.51
Nkx1-1G3UXB3 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Nkx1-1G3UXB3 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Nkx1-1G3UXB3 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Nkx1-1G3UXB3 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC30.63■■■□□ 2.49
Nkx1-1G3UXB3 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Nkx1-1G3UXB3 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
Nkx1-1G3UXB3 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Nkx1-1G3UXB3 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Nkx1-1G3UXB3 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC30.54■■■□□ 2.48
Nkx1-1G3UXB3 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC30.53■■■□□ 2.48
Nkx1-1G3UXB3 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC30.53■■■□□ 2.48
Nkx1-1G3UXB3 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC30.53■■■□□ 2.48
Nkx1-1G3UXB3 Gm10524-201ENSMUST00000181931 1893 ntBASIC30.53■■■□□ 2.48
Nkx1-1G3UXB3 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC30.47■■■□□ 2.47
Nkx1-1G3UXB3 Mir6538-201ENSMUST00000183713 110 ntBASIC30.47■■■□□ 2.47
Nkx1-1G3UXB3 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Nkx1-1G3UXB3 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Nkx1-1G3UXB3 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Nkx1-1G3UXB3 Gm42596-201ENSMUST00000196305 1958 ntBASIC30.41■■■□□ 2.46
Nkx1-1G3UXB3 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC30.41■■■□□ 2.46
Nkx1-1G3UXB3 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC30.4■■■□□ 2.46
Nkx1-1G3UXB3 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
Nkx1-1G3UXB3 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC30.39■■■□□ 2.46
Nkx1-1G3UXB3 Cap2-205ENSMUST00000225824 1634 ntBASIC30.38■■■□□ 2.45
Nkx1-1G3UXB3 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Nkx1-1G3UXB3 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Nkx1-1G3UXB3 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Nkx1-1G3UXB3 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC30.35■■■□□ 2.45
Nkx1-1G3UXB3 CT025624.2-201ENSMUST00000223609 1909 ntBASIC30.35■■■□□ 2.45
Nkx1-1G3UXB3 Gm7432-201ENSMUST00000210343 879 ntBASIC30.34■■■□□ 2.45
Nkx1-1G3UXB3 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Nkx1-1G3UXB3 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Nkx1-1G3UXB3 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Nkx1-1G3UXB3 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Nkx1-1G3UXB3 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC30.3■■■□□ 2.44
Nkx1-1G3UXB3 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC30.3■■■□□ 2.44
Nkx1-1G3UXB3 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Nkx1-1G3UXB3 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Nkx1-1G3UXB3 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC30.29■■■□□ 2.44
Nkx1-1G3UXB3 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC30.28■■■□□ 2.44
Nkx1-1G3UXB3 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
Nkx1-1G3UXB3 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC30.27■■■□□ 2.44
Nkx1-1G3UXB3 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Nkx1-1G3UXB3 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC30.26■■■□□ 2.43
Nkx1-1G3UXB3 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC30.25■■■□□ 2.43
Nkx1-1G3UXB3 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Nkx1-1G3UXB3 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Nkx1-1G3UXB3 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
Nkx1-1G3UXB3 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.42
Nkx1-1G3UXB3 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Nkx1-1G3UXB3 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Nkx1-1G3UXB3 Gm11175-201ENSMUST00000116172 543 ntBASIC30.13■■■□□ 2.41
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms