Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC22.73■■□□□ 1.23
Chd6A3KFM7 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC22.73■■□□□ 1.23
Chd6A3KFM7 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Chd6A3KFM7 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
Chd6A3KFM7 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Chd6A3KFM7 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC22.68■■□□□ 1.22
Chd6A3KFM7 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Chd6A3KFM7 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC22.68■■□□□ 1.22
Chd6A3KFM7 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Chd6A3KFM7 Gm9939-201ENSMUST00000067161 1154 ntBASIC22.66■■□□□ 1.22
Chd6A3KFM7 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Chd6A3KFM7 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Chd6A3KFM7 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
Chd6A3KFM7 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC22.57■■□□□ 1.2
Chd6A3KFM7 Peli2-204ENSMUST00000226513 1320 ntBASIC22.57■■□□□ 1.2
Chd6A3KFM7 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Chd6A3KFM7 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC22.53■■□□□ 1.2
Chd6A3KFM7 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Chd6A3KFM7 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Chd6A3KFM7 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Chd6A3KFM7 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC22.51■■□□□ 1.19
Chd6A3KFM7 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC22.51■■□□□ 1.19
Chd6A3KFM7 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Chd6A3KFM7 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Chd6A3KFM7 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Chd6A3KFM7 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Chd6A3KFM7 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Chd6A3KFM7 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Chd6A3KFM7 Gm6821-201ENSMUST00000107540 542 ntBASIC22.44■■□□□ 1.18
Chd6A3KFM7 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Chd6A3KFM7 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Chd6A3KFM7 Gm24970-201ENSMUST00000175582 82 ntBASIC22.42■■□□□ 1.18
Chd6A3KFM7 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Chd6A3KFM7 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Chd6A3KFM7 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC22.4■■□□□ 1.18
Chd6A3KFM7 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC22.39■■□□□ 1.17
Chd6A3KFM7 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Chd6A3KFM7 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC22.37■■□□□ 1.17
Chd6A3KFM7 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Chd6A3KFM7 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Chd6A3KFM7 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC22.35■■□□□ 1.17
Chd6A3KFM7 Mir6538-201ENSMUST00000183713 110 ntBASIC22.35■■□□□ 1.17
Chd6A3KFM7 AL845457.1-201ENSMUST00000197244 68 ntBASIC22.35■■□□□ 1.17
Chd6A3KFM7 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Chd6A3KFM7 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC22.34■■□□□ 1.17
Chd6A3KFM7 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Chd6A3KFM7 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Chd6A3KFM7 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chd6A3KFM7 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
Chd6A3KFM7 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Chd6A3KFM7 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC22.26■■□□□ 1.15
Chd6A3KFM7 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chd6A3KFM7 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Chd6A3KFM7 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Chd6A3KFM7 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC22.17■■□□□ 1.14
Chd6A3KFM7 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC22.17■■□□□ 1.14
Chd6A3KFM7 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Chd6A3KFM7 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Chd6A3KFM7 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC22.12■■□□□ 1.13
Chd6A3KFM7 Gm7432-201ENSMUST00000210343 879 ntBASIC22.12■■□□□ 1.13
Chd6A3KFM7 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Chd6A3KFM7 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Chd6A3KFM7 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Chd6A3KFM7 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
Chd6A3KFM7 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC22.1■■□□□ 1.13
Chd6A3KFM7 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC22.1■■□□□ 1.13
Chd6A3KFM7 Cap2-205ENSMUST00000225824 1634 ntBASIC22.1■■□□□ 1.13
Chd6A3KFM7 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Chd6A3KFM7 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC22.08■■□□□ 1.12
Chd6A3KFM7 Gm42596-201ENSMUST00000196305 1958 ntBASIC22.06■■□□□ 1.12
Chd6A3KFM7 Gm11175-201ENSMUST00000116172 543 ntBASIC22.05■■□□□ 1.12
Chd6A3KFM7 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC22.05■■□□□ 1.12
Chd6A3KFM7 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
Chd6A3KFM7 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Chd6A3KFM7 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Chd6A3KFM7 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Chd6A3KFM7 Gm10524-201ENSMUST00000181931 1893 ntBASIC22.03■■□□□ 1.12
Chd6A3KFM7 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC22.03■■□□□ 1.12
Chd6A3KFM7 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Chd6A3KFM7 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Chd6A3KFM7 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC22■■□□□ 1.11
Chd6A3KFM7 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Chd6A3KFM7 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Chd6A3KFM7 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Chd6A3KFM7 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC21.97■■□□□ 1.11
Chd6A3KFM7 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC21.96■■□□□ 1.11
Chd6A3KFM7 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
Chd6A3KFM7 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Chd6A3KFM7 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Chd6A3KFM7 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC21.93■■□□□ 1.1
Chd6A3KFM7 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC21.91■■□□□ 1.1
Chd6A3KFM7 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Chd6A3KFM7 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Chd6A3KFM7 CT025624.2-201ENSMUST00000223609 1909 ntBASIC21.88■■□□□ 1.09
Chd6A3KFM7 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Chd6A3KFM7 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Chd6A3KFM7 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Chd6A3KFM7 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
Chd6A3KFM7 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Chd6A3KFM7 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms