Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Snrnp40Q6PE01 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Snrnp40Q6PE01 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Snrnp40Q6PE01 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Snrnp40Q6PE01 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Snrnp40Q6PE01 Gm12933-201ENSMUST00000120203 872 ntBASIC17.84■□□□□ 0.45
Snrnp40Q6PE01 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
Snrnp40Q6PE01 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Snrnp40Q6PE01 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC17.84■□□□□ 0.45
Snrnp40Q6PE01 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Snrnp40Q6PE01 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Snrnp40Q6PE01 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Snrnp40Q6PE01 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Snrnp40Q6PE01 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Snrnp40Q6PE01 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC17.83■□□□□ 0.45
Snrnp40Q6PE01 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Snrnp40Q6PE01 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Snrnp40Q6PE01 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Snrnp40Q6PE01 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Snrnp40Q6PE01 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Snrnp40Q6PE01 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Snrnp40Q6PE01 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 AC153962.1-201ENSMUST00000218530 1948 ntBASIC17.82■□□□□ 0.44
Snrnp40Q6PE01 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Snrnp40Q6PE01 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Snrnp40Q6PE01 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Snrnp40Q6PE01 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Snrnp40Q6PE01 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Snrnp40Q6PE01 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Snrnp40Q6PE01 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Snrnp40Q6PE01 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Snrnp40Q6PE01 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC17.8■□□□□ 0.44
Snrnp40Q6PE01 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Snrnp40Q6PE01 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC17.8■□□□□ 0.44
Snrnp40Q6PE01 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC17.8■□□□□ 0.44
Snrnp40Q6PE01 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC17.8■□□□□ 0.44
Snrnp40Q6PE01 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Snrnp40Q6PE01 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Snrnp40Q6PE01 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Snrnp40Q6PE01 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Snrnp40Q6PE01 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Snrnp40Q6PE01 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Snrnp40Q6PE01 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC17.79■□□□□ 0.44
Snrnp40Q6PE01 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Snrnp40Q6PE01 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Snrnp40Q6PE01 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Snrnp40Q6PE01 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Snrnp40Q6PE01 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Snrnp40Q6PE01 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
Snrnp40Q6PE01 Gm13234-201ENSMUST00000120010 747 ntBASIC17.78■□□□□ 0.44
Snrnp40Q6PE01 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Snrnp40Q6PE01 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Snrnp40Q6PE01 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC17.78■□□□□ 0.44
Snrnp40Q6PE01 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Snrnp40Q6PE01 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Snrnp40Q6PE01 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Snrnp40Q6PE01 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Snrnp40Q6PE01 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.77■□□□□ 0.44
Snrnp40Q6PE01 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Snrnp40Q6PE01 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Snrnp40Q6PE01 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Snrnp40Q6PE01 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC17.77■□□□□ 0.44
Snrnp40Q6PE01 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Snrnp40Q6PE01 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Snrnp40Q6PE01 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Snrnp40Q6PE01 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Snrnp40Q6PE01 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Snrnp40Q6PE01 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Snrnp40Q6PE01 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Snrnp40Q6PE01 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Snrnp40Q6PE01 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Snrnp40Q6PE01 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Snrnp40Q6PE01 Gm14281-201ENSMUST00000121700 1294 ntBASIC17.76■□□□□ 0.43
Snrnp40Q6PE01 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Snrnp40Q6PE01 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Snrnp40Q6PE01 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Snrnp40Q6PE01 Mir6236-201ENSMUST00000184437 123 ntBASIC17.76■□□□□ 0.43
Snrnp40Q6PE01 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
Snrnp40Q6PE01 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Snrnp40Q6PE01 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Snrnp40Q6PE01 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Snrnp40Q6PE01 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Snrnp40Q6PE01 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Snrnp40Q6PE01 Reep4-203ENSMUST00000226563 1444 ntBASIC17.75■□□□□ 0.43
Snrnp40Q6PE01 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms