Protein–RNA interactions for Protein: B1AVK5

Col4a6, Collagen, type IV, alpha 6, mousemouse

Predictions only

Length 1,691 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a6B1AVK5 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col4a6B1AVK5 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col4a6B1AVK5 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC21.18■□□□□ 0.98
Col4a6B1AVK5 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col4a6B1AVK5 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col4a6B1AVK5 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col4a6B1AVK5 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col4a6B1AVK5 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col4a6B1AVK5 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC21.18■□□□□ 0.98
Col4a6B1AVK5 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC21.17■□□□□ 0.98
Col4a6B1AVK5 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC21.17■□□□□ 0.98
Col4a6B1AVK5 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC21.17■□□□□ 0.98
Col4a6B1AVK5 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC21.17■□□□□ 0.98
Col4a6B1AVK5 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC21.17■□□□□ 0.98
Col4a6B1AVK5 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col4a6B1AVK5 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC21.17■□□□□ 0.98
Col4a6B1AVK5 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col4a6B1AVK5 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Col4a6B1AVK5 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col4a6B1AVK5 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col4a6B1AVK5 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col4a6B1AVK5 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col4a6B1AVK5 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col4a6B1AVK5 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col4a6B1AVK5 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
Col4a6B1AVK5 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col4a6B1AVK5 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC21.15■□□□□ 0.98
Col4a6B1AVK5 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col4a6B1AVK5 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col4a6B1AVK5 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col4a6B1AVK5 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col4a6B1AVK5 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC21.15■□□□□ 0.98
Col4a6B1AVK5 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC21.15■□□□□ 0.98
Col4a6B1AVK5 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col4a6B1AVK5 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col4a6B1AVK5 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col4a6B1AVK5 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
Col4a6B1AVK5 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col4a6B1AVK5 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC21.14■□□□□ 0.97
Col4a6B1AVK5 Gm42778-201ENSMUST00000199644 553 ntBASIC21.14■□□□□ 0.97
Col4a6B1AVK5 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Col4a6B1AVK5 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col4a6B1AVK5 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
Col4a6B1AVK5 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col4a6B1AVK5 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
Col4a6B1AVK5 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col4a6B1AVK5 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col4a6B1AVK5 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col4a6B1AVK5 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col4a6B1AVK5 Gm13234-201ENSMUST00000120010 747 ntBASIC21.13■□□□□ 0.97
Col4a6B1AVK5 Gm27801-201ENSMUST00000184174 223 ntBASIC21.13■□□□□ 0.97
Col4a6B1AVK5 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC21.13■□□□□ 0.97
Col4a6B1AVK5 AC137127.1-201ENSMUST00000213466 1078 ntBASIC21.13■□□□□ 0.97
Col4a6B1AVK5 Ap3s1-204ENSMUST00000225520 957 ntBASIC21.13■□□□□ 0.97
Col4a6B1AVK5 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col4a6B1AVK5 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Col4a6B1AVK5 Reep4-203ENSMUST00000226563 1444 ntBASIC21.13■□□□□ 0.97
Col4a6B1AVK5 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a6B1AVK5 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a6B1AVK5 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC21.12■□□□□ 0.97
Col4a6B1AVK5 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a6B1AVK5 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a6B1AVK5 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a6B1AVK5 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a6B1AVK5 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a6B1AVK5 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a6B1AVK5 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a6B1AVK5 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a6B1AVK5 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
Col4a6B1AVK5 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col4a6B1AVK5 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col4a6B1AVK5 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col4a6B1AVK5 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Col4a6B1AVK5 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col4a6B1AVK5 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col4a6B1AVK5 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a6B1AVK5 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a6B1AVK5 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a6B1AVK5 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a6B1AVK5 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a6B1AVK5 Mir6236-201ENSMUST00000184437 123 ntBASIC21.1■□□□□ 0.97
Col4a6B1AVK5 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC21.1■□□□□ 0.97
Col4a6B1AVK5 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC21.1■□□□□ 0.97
Col4a6B1AVK5 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a6B1AVK5 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC21.1■□□□□ 0.97
Col4a6B1AVK5 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a6B1AVK5 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a6B1AVK5 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a6B1AVK5 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a6B1AVK5 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col4a6B1AVK5 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Col4a6B1AVK5 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
Col4a6B1AVK5 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a6B1AVK5 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a6B1AVK5 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a6B1AVK5 Gm44949-201ENSMUST00000206423 1450 ntBASIC21.09■□□□□ 0.97
Col4a6B1AVK5 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a6B1AVK5 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Col4a6B1AVK5 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col4a6B1AVK5 Gm9988-201ENSMUST00000069786 435 ntBASIC21.09■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 206.2 ms