Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Prph2-201ENSMUST00000024773 2665 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Bcl2l11-201ENSMUST00000019281 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Cfap54-201ENSMUST00000020200 2473 ntAPPRIS ALT2 TSL 5 BASIC8.91□□□□□ -0.98
Cdx1P18111 Slco5a1-205ENSMUST00000146763 3437 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 A530021J07Rik-202ENSMUST00000207727 1406 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Pde2a-201ENSMUST00000163751 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Myh11-201ENSMUST00000090287 6632 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Rbbp6-202ENSMUST00000071590 5728 ntAPPRIS ALT2 TSL 5 BASIC8.91□□□□□ -0.98
Cdx1P18111 Tmem150c-201ENSMUST00000063192 3084 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Tgfbrap1-201ENSMUST00000095014 5607 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Atxn2l-206ENSMUST00000206577 3894 ntAPPRIS ALT2 TSL 5 BASIC8.91□□□□□ -0.98
Cdx1P18111 Gmps-201ENSMUST00000029405 8105 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC8.91□□□□□ -0.98
Cdx1P18111 Gm6335-201ENSMUST00000118081 1194 ntBASIC8.91□□□□□ -0.98
Cdx1P18111 Thbs3-202ENSMUST00000119084 2993 ntAPPRIS ALT2 TSL 5 BASIC8.91□□□□□ -0.98
Cdx1P18111 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC8.91□□□□□ -0.98
Cdx1P18111 Gm7816-201ENSMUST00000119884 1194 ntBASIC8.91□□□□□ -0.98
Cdx1P18111 Gm15542-201ENSMUST00000121585 1194 ntBASIC8.91□□□□□ -0.98
Cdx1P18111 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC8.91□□□□□ -0.98
Cdx1P18111 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC8.91□□□□□ -0.98
Cdx1P18111 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC8.91□□□□□ -0.98
Cdx1P18111 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC8.91□□□□□ -0.98
Cdx1P18111 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC8.91□□□□□ -0.98
Cdx1P18111 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Pik3c3-201ENSMUST00000091978 2998 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Plxna3-201ENSMUST00000004326 6943 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Nhlrc3-201ENSMUST00000056749 5047 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Gm26686-201ENSMUST00000181951 3467 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Pias2-203ENSMUST00000168882 4984 ntAPPRIS P4 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Hspa12a-201ENSMUST00000066285 5733 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Traf1-207ENSMUST00000172159 3436 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Cacna1d-204ENSMUST00000223803 6435 ntAPPRIS ALT2 BASIC8.91□□□□□ -0.98
Cdx1P18111 Gm16982-201ENSMUST00000181275 2620 ntTSL 2 BASIC8.91□□□□□ -0.98
Cdx1P18111 Ovgp1-201ENSMUST00000000573 2616 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Gm32219-201ENSMUST00000221234 1819 ntTSL 5 BASIC8.91□□□□□ -0.98
Cdx1P18111 Prdm1-204ENSMUST00000218369 2517 ntAPPRIS ALT2 TSL 5 BASIC8.91□□□□□ -0.98
Cdx1P18111 Ano1-202ENSMUST00000118556 4566 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Kcnj5-202ENSMUST00000214223 3101 ntAPPRIS P1 TSL 5 BASIC8.91□□□□□ -0.98
Cdx1P18111 Gm15631-201ENSMUST00000142962 2436 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Astn1-205ENSMUST00000193042 7248 ntAPPRIS P3 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Smchd1-201ENSMUST00000127430 7052 ntAPPRIS P1 TSL 5 BASIC8.91□□□□□ -0.98
Cdx1P18111 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Wnk1-204ENSMUST00000088646 8364 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 C230021G24Rik-201ENSMUST00000181196 3679 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Ccdc167-203ENSMUST00000129091 2256 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Cdx1P18111 Setbp1-201ENSMUST00000025430 9953 ntAPPRIS P1 TSL 5 BASIC8.91□□□□□ -0.98
Cdx1P18111 Kif2b-201ENSMUST00000061019 2244 ntAPPRIS P1 BASIC8.9□□□□□ -0.98
Cdx1P18111 Ddx21-201ENSMUST00000045866 4722 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Gm26673-201ENSMUST00000181126 3377 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Clip3-201ENSMUST00000014065 3300 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Pde5a-201ENSMUST00000066728 6939 ntAPPRIS P2 TSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Micall2-204ENSMUST00000170773 3157 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Zfp324-201ENSMUST00000038701 4315 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Slc34a2-201ENSMUST00000094787 4176 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Fer1l5-202ENSMUST00000179162 6315 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Mid1-202ENSMUST00000078947 3591 ntTSL 5 BASIC8.9□□□□□ -0.98
Cdx1P18111 4930417O13Rik-203ENSMUST00000204911 3458 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC8.9□□□□□ -0.98
Cdx1P18111 Spen-202ENSMUST00000105786 12299 ntAPPRIS P3 TSL 5 BASIC8.9□□□□□ -0.98
Cdx1P18111 Gfi1b-204ENSMUST00000164290 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Gm23949-201ENSMUST00000104027 127 ntBASIC8.9□□□□□ -0.98
Cdx1P18111 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC8.9□□□□□ -0.98
Cdx1P18111 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC8.9□□□□□ -0.98
Cdx1P18111 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC8.9□□□□□ -0.98
Cdx1P18111 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC8.9□□□□□ -0.98
Cdx1P18111 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC8.9□□□□□ -0.98
Cdx1P18111 Mir1943-201ENSMUST00000158276 73 ntBASIC8.9□□□□□ -0.98
Cdx1P18111 Gm5616-201ENSMUST00000165252 384 ntBASIC8.9□□□□□ -0.98
Cdx1P18111 Gm8741-201ENSMUST00000174736 384 ntBASIC8.9□□□□□ -0.98
Cdx1P18111 Gm5732-201ENSMUST00000182596 1007 ntBASIC8.9□□□□□ -0.98
Cdx1P18111 Gm9211-201ENSMUST00000182882 975 ntBASIC8.9□□□□□ -0.98
Cdx1P18111 Gm37835-201ENSMUST00000193305 361 ntBASIC8.9□□□□□ -0.98
Cdx1P18111 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC8.9□□□□□ -0.98
Cdx1P18111 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC8.9□□□□□ -0.98
Cdx1P18111 Gm18556-201ENSMUST00000219748 1031 ntBASIC8.9□□□□□ -0.98
Cdx1P18111 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 AC154252.2-201ENSMUST00000223593 767 ntBASIC8.9□□□□□ -0.98
Cdx1P18111 AC159205.5-202ENSMUST00000224849 386 ntBASIC8.9□□□□□ -0.98
Cdx1P18111 AC163667.3-201ENSMUST00000225774 222 ntBASIC8.9□□□□□ -0.98
Cdx1P18111 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC8.9□□□□□ -0.98
Cdx1P18111 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Cdx1P18111 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC8.9□□□□□ -0.98
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms