Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Sez6l-205ENSMUST00000212480 5857 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Fxr1-206ENSMUST00000198051 2127 ntTSL 5 BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Gm3017-201ENSMUST00000203603 1126 ntBASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Gm35713-201ENSMUST00000210516 199 ntBASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Golga2-203ENSMUST00000113377 4361 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Bod1l-201ENSMUST00000050556 10540 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Gm36940-201ENSMUST00000194281 2036 ntBASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Cd2bp2-202ENSMUST00000166791 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps53Q8CCB4 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Amotl1-201ENSMUST00000013220 8957 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Klhl29-202ENSMUST00000218384 2716 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Gm45416-201ENSMUST00000209713 2201 ntBASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Olfr742-203ENSMUST00000217437 2244 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Anxa9-202ENSMUST00000107183 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Gm12463-201ENSMUST00000118271 849 ntBASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Gm15615-201ENSMUST00000118876 198 ntBASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Mir6407-201ENSMUST00000184510 101 ntBASIC12.92□□□□□ -0.34
Vps53Q8CCB4 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Gm5621-201ENSMUST00000187303 640 ntBASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Gm18059-201ENSMUST00000208073 580 ntBASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 AC159376.1-201ENSMUST00000218504 630 ntBASIC12.92□□□□□ -0.34
Vps53Q8CCB4 AC122891.1-201ENSMUST00000218671 268 ntBASIC12.92□□□□□ -0.34
Vps53Q8CCB4 AC160929.1-201ENSMUST00000221247 415 ntBASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Trim61-201ENSMUST00000078409 1977 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps53Q8CCB4 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Hsd17b6-203ENSMUST00000219447 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 5330417C22Rik-202ENSMUST00000106625 5836 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Gm6655-201ENSMUST00000201932 1309 ntBASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Gm13135-201ENSMUST00000117628 3121 ntBASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Klhl22-208ENSMUST00000165790 2616 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Gm14892-201ENSMUST00000117636 267 ntBASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Gm17798-201ENSMUST00000182282 1035 ntBASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Fabp6-201ENSMUST00000020672 479 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Gm45758-201ENSMUST00000212448 1006 ntBASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Gm4065-201ENSMUST00000218715 763 ntTSL 2 BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 AC164437.3-201ENSMUST00000228323 347 ntBASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Gm5805-201ENSMUST00000072779 456 ntBASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Gm8325-201ENSMUST00000099086 453 ntBASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Kif3c-201ENSMUST00000020999 6791 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Pitpnm2os2-203ENSMUST00000198466 2467 ntBASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 AC124433.1-202ENSMUST00000224762 1535 ntBASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Gtf3c2-201ENSMUST00000088010 4552 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Vps53Q8CCB4 Gm45140-202ENSMUST00000204419 5061 ntAPPRIS P5 TSL 5 BASIC12.91□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms