Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sox1P53783 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Sox1P53783 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Ikzf2-204ENSMUST00000188110 1365 ntTSL 5 BASIC11.43□□□□□ -0.58
Sox1P53783 Ikzf2-208ENSMUST00000190855 1359 ntTSL 5 BASIC11.43□□□□□ -0.58
Sox1P53783 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
Sox1P53783 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Sox1P53783 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Sox1P53783 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC11.43□□□□□ -0.58
Sox1P53783 Vcp-rs-201ENSMUST00000120233 2406 ntBASIC11.43□□□□□ -0.58
Sox1P53783 Ighv13-1-201ENSMUST00000103480 294 ntBASIC11.43□□□□□ -0.58
Sox1P53783 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Gm13688-201ENSMUST00000121557 608 ntBASIC11.43□□□□□ -0.58
Sox1P53783 Gm25694-201ENSMUST00000175448 282 ntBASIC11.43□□□□□ -0.58
Sox1P53783 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Gm8525-201ENSMUST00000189674 861 ntBASIC11.43□□□□□ -0.58
Sox1P53783 Gm44498-201ENSMUST00000199509 111 ntBASIC11.43□□□□□ -0.58
Sox1P53783 Gm45745-201ENSMUST00000211447 1180 ntBASIC11.43□□□□□ -0.58
Sox1P53783 AC158518.1-201ENSMUST00000216435 320 ntTSL 5 BASIC11.43□□□□□ -0.58
Sox1P53783 AC122024.3-201ENSMUST00000217719 294 ntBASIC11.43□□□□□ -0.58
Sox1P53783 Gm40689-201ENSMUST00000218006 362 ntTSL 5 BASIC11.43□□□□□ -0.58
Sox1P53783 AC153929.1-201ENSMUST00000219009 303 ntBASIC11.43□□□□□ -0.58
Sox1P53783 Elobl-202ENSMUST00000082339 300 ntBASIC11.43□□□□□ -0.58
Sox1P53783 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC11.43□□□□□ -0.58
Sox1P53783 Taar5-201ENSMUST00000092659 1014 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Sox1P53783 Gm37472-201ENSMUST00000192342 4052 ntBASIC11.43□□□□□ -0.58
Sox1P53783 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Gm37651-201ENSMUST00000194679 1494 ntBASIC11.43□□□□□ -0.58
Sox1P53783 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC11.43□□□□□ -0.58
Sox1P53783 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Sox1P53783 Galntl5-201ENSMUST00000030778 1627 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Sox1P53783 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Sh3bgrl3-202ENSMUST00000105879 518 ntTSL 3 BASIC11.42□□□□□ -0.58
Sox1P53783 Psme2-201ENSMUST00000111378 795 ntTSL 5 BASIC11.42□□□□□ -0.58
Sox1P53783 Gm14571-201ENSMUST00000118292 570 ntBASIC11.42□□□□□ -0.58
Sox1P53783 Gm15702-201ENSMUST00000119680 444 ntBASIC11.42□□□□□ -0.58
Sox1P53783 Gm16341-201ENSMUST00000126385 377 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 A630023A22Rik-201ENSMUST00000178958 1277 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Rpl15-ps2-201ENSMUST00000184247 613 ntBASIC11.42□□□□□ -0.58
Sox1P53783 Gm28499-201ENSMUST00000191576 666 ntTSL 2 BASIC11.42□□□□□ -0.58
Sox1P53783 Gm26901-204ENSMUST00000193732 631 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Gm31678-201ENSMUST00000198262 454 ntTSL 3 BASIC11.42□□□□□ -0.58
Sox1P53783 2010008C14Rik-201ENSMUST00000203956 593 ntBASIC11.42□□□□□ -0.58
Sox1P53783 Gm33570-201ENSMUST00000207608 1254 ntTSL 5 BASIC11.42□□□□□ -0.58
Sox1P53783 Gm15396-201ENSMUST00000209101 1089 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Olfr1248-201ENSMUST00000216129 1078 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Sox1P53783 Ormdl2-203ENSMUST00000219215 1051 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Dcpp2-201ENSMUST00000088598 611 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC11.42□□□□□ -0.58
Sox1P53783 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC11.42□□□□□ -0.58
Sox1P53783 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
Sox1P53783 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Sox1P53783 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Sox1P53783 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC11.42□□□□□ -0.58
Sox1P53783 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC11.42□□□□□ -0.58
Sox1P53783 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Sox1P53783 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Ckap2-201ENSMUST00000046916 2593 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Mgl2-205ENSMUST00000165951 1635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Gm31718-201ENSMUST00000212406 1646 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 3110001I22Rik-201ENSMUST00000035426 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Sox1P53783 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC11.42□□□□□ -0.58
Sox1P53783 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Sox1P53783 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Sox1P53783 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Sox1P53783 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Sox1P53783 Dync2li1-201ENSMUST00000025101 1324 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Sox1P53783 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Sox1P53783 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 76.6 ms