Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CXCL12P48061 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CXCL12P48061 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
CXCL12P48061 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC22.8■■□□□ 1.24
CXCL12P48061 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC22.79■■□□□ 1.24
CXCL12P48061 USF2-207ENST00000595068 1612 ntTSL 5 BASIC22.79■■□□□ 1.24
CXCL12P48061 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.79■■□□□ 1.24
CXCL12P48061 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CXCL12P48061 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
CXCL12P48061 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
CXCL12P48061 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
CXCL12P48061 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC22.79■■□□□ 1.24
CXCL12P48061 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
CXCL12P48061 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22.79■■□□□ 1.24
CXCL12P48061 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CXCL12P48061 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CXCL12P48061 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CXCL12P48061 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC22.79■■□□□ 1.24
CXCL12P48061 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CXCL12P48061 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CXCL12P48061 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CXCL12P48061 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
CXCL12P48061 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
CXCL12P48061 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
CXCL12P48061 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.24
CXCL12P48061 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CXCL12P48061 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.78■■□□□ 1.24
CXCL12P48061 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
CXCL12P48061 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
CXCL12P48061 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
CXCL12P48061 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CXCL12P48061 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
CXCL12P48061 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
CXCL12P48061 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC22.77■■□□□ 1.24
CXCL12P48061 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC22.77■■□□□ 1.24
CXCL12P48061 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC22.77■■□□□ 1.24
CXCL12P48061 KRT18P14-201ENST00000534205 1250 ntBASIC22.77■■□□□ 1.24
CXCL12P48061 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.77■■□□□ 1.24
CXCL12P48061 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.77■■□□□ 1.24
CXCL12P48061 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CXCL12P48061 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC22.77■■□□□ 1.24
CXCL12P48061 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC22.76■■□□□ 1.23
CXCL12P48061 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC22.76■■□□□ 1.23
CXCL12P48061 AL161729.1-201ENST00000604104 1402 ntBASIC22.76■■□□□ 1.23
CXCL12P48061 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
CXCL12P48061 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC22.76■■□□□ 1.23
CXCL12P48061 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC22.76■■□□□ 1.23
CXCL12P48061 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
CXCL12P48061 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
CXCL12P48061 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC22.76■■□□□ 1.23
CXCL12P48061 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC22.75■■□□□ 1.23
CXCL12P48061 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
CXCL12P48061 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
CXCL12P48061 DENND3-207ENST00000518347 850 ntTSL 2 BASIC22.75■■□□□ 1.23
CXCL12P48061 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC22.75■■□□□ 1.23
CXCL12P48061 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
CXCL12P48061 LINC02228-203ENST00000641970 1355 ntBASIC22.75■■□□□ 1.23
CXCL12P48061 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC22.74■■□□□ 1.23
CXCL12P48061 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC22.74■■□□□ 1.23
CXCL12P48061 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC22.74■■□□□ 1.23
CXCL12P48061 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC22.74■■□□□ 1.23
CXCL12P48061 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC22.74■■□□□ 1.23
CXCL12P48061 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
CXCL12P48061 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.74■■□□□ 1.23
CXCL12P48061 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.74■■□□□ 1.23
CXCL12P48061 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.74■■□□□ 1.23
CXCL12P48061 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
CXCL12P48061 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CXCL12P48061 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC22.73■■□□□ 1.23
CXCL12P48061 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC22.73■■□□□ 1.23
CXCL12P48061 TERF1P2-201ENST00000583350 1212 ntBASIC22.73■■□□□ 1.23
CXCL12P48061 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
CXCL12P48061 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
CXCL12P48061 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
CXCL12P48061 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
CXCL12P48061 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC22.72■■□□□ 1.23
CXCL12P48061 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC22.72■■□□□ 1.23
CXCL12P48061 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
CXCL12P48061 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.72■■□□□ 1.23
CXCL12P48061 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
CXCL12P48061 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CXCL12P48061 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC22.71■■□□□ 1.23
CXCL12P48061 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
CXCL12P48061 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
CXCL12P48061 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CXCL12P48061 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
CXCL12P48061 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CXCL12P48061 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
CXCL12P48061 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC22.71■■□□□ 1.23
CXCL12P48061 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CXCL12P48061 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CXCL12P48061 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CXCL12P48061 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CXCL12P48061 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC22.7■■□□□ 1.22
CXCL12P48061 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
CXCL12P48061 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
CXCL12P48061 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC22.7■■□□□ 1.22
CXCL12P48061 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CXCL12P48061 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC22.7■■□□□ 1.22
CXCL12P48061 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms