Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC18.22■□□□□ 0.51
Pcdh1F7BJK1 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pcdh1F7BJK1 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Pcdh1F7BJK1 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pcdh1F7BJK1 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pcdh1F7BJK1 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pcdh1F7BJK1 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pcdh1F7BJK1 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC18.22■□□□□ 0.51
Pcdh1F7BJK1 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pcdh1F7BJK1 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pcdh1F7BJK1 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Pcdh1F7BJK1 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Pcdh1F7BJK1 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Pcdh1F7BJK1 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Pcdh1F7BJK1 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Pcdh1F7BJK1 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pcdh1F7BJK1 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pcdh1F7BJK1 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Pcdh1F7BJK1 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pcdh1F7BJK1 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Pcdh1F7BJK1 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pcdh1F7BJK1 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pcdh1F7BJK1 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Pcdh1F7BJK1 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Pcdh1F7BJK1 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Pcdh1F7BJK1 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC18.19■□□□□ 0.5
Pcdh1F7BJK1 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Pcdh1F7BJK1 Gm5067-201ENSMUST00000170449 1009 ntBASIC18.19■□□□□ 0.5
Pcdh1F7BJK1 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Pcdh1F7BJK1 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC18.19■□□□□ 0.5
Pcdh1F7BJK1 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Pcdh1F7BJK1 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Pcdh1F7BJK1 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Pcdh1F7BJK1 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Pcdh1F7BJK1 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Pcdh1F7BJK1 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Pcdh1F7BJK1 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Pcdh1F7BJK1 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Pcdh1F7BJK1 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC18.18■□□□□ 0.5
Pcdh1F7BJK1 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Pcdh1F7BJK1 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Pcdh1F7BJK1 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC18.18■□□□□ 0.5
Pcdh1F7BJK1 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Pcdh1F7BJK1 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
Pcdh1F7BJK1 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Pcdh1F7BJK1 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Pcdh1F7BJK1 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Pcdh1F7BJK1 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Pcdh1F7BJK1 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Pcdh1F7BJK1 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Pcdh1F7BJK1 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Pcdh1F7BJK1 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Pcdh1F7BJK1 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Pcdh1F7BJK1 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Pcdh1F7BJK1 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Pcdh1F7BJK1 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Pcdh1F7BJK1 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Pcdh1F7BJK1 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdh1F7BJK1 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC18.16■□□□□ 0.5
Pcdh1F7BJK1 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Pcdh1F7BJK1 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdh1F7BJK1 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Pcdh1F7BJK1 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Pcdh1F7BJK1 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdh1F7BJK1 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdh1F7BJK1 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Pcdh1F7BJK1 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC18.15■□□□□ 0.5
Pcdh1F7BJK1 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdh1F7BJK1 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdh1F7BJK1 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Pcdh1F7BJK1 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdh1F7BJK1 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdh1F7BJK1 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC18.15■□□□□ 0.5
Pcdh1F7BJK1 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdh1F7BJK1 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdh1F7BJK1 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Pcdh1F7BJK1 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdh1F7BJK1 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdh1F7BJK1 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdh1F7BJK1 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC18.14■□□□□ 0.5
Pcdh1F7BJK1 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Pcdh1F7BJK1 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Pcdh1F7BJK1 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Pcdh1F7BJK1 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Pcdh1F7BJK1 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Pcdh1F7BJK1 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Pcdh1F7BJK1 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Pcdh1F7BJK1 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pcdh1F7BJK1 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pcdh1F7BJK1 Hsf1-204ENSMUST00000226872 2104 ntBASIC18.13■□□□□ 0.49
Pcdh1F7BJK1 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Pcdh1F7BJK1 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC18.13■□□□□ 0.49
Pcdh1F7BJK1 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Pcdh1F7BJK1 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pcdh1F7BJK1 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Pcdh1F7BJK1 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Pcdh1F7BJK1 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Pcdh1F7BJK1 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Pcdh1F7BJK1 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Pcdh1F7BJK1 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 78.7 ms