Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 D2hgdh-201ENSMUST00000097633 3232 ntAPPRIS P3 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC9.22□□□□□ -0.93
Hmgb3O54879 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
Hmgb3O54879 Gm38271-201ENSMUST00000192296 1603 ntBASIC9.22□□□□□ -0.93
Hmgb3O54879 Lrfn5-202ENSMUST00000119481 3615 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Ncapd3-202ENSMUST00000086198 4675 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Lcorl-205ENSMUST00000121573 2378 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Rasgrp4-211ENSMUST00000203380 3077 ntTSL 5 BASIC9.22□□□□□ -0.93
Hmgb3O54879 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC9.22□□□□□ -0.93
Hmgb3O54879 Synj2-209ENSMUST00000115790 4808 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
Hmgb3O54879 Gm18798-201ENSMUST00000187264 1700 ntBASIC9.22□□□□□ -0.93
Hmgb3O54879 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC9.22□□□□□ -0.93
Hmgb3O54879 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC9.22□□□□□ -0.93
Hmgb3O54879 Prrg3-201ENSMUST00000048790 5931 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 H2-T3-201ENSMUST00000025312 2114 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Hmgb3O54879 Rufy4-202ENSMUST00000127134 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.93
Hmgb3O54879 Cd2bp2-203ENSMUST00000205316 2912 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
Hmgb3O54879 Ptk2b-203ENSMUST00000111121 3365 ntTSL 1 (best) BASIC9.21□□□□□ -0.93
Hmgb3O54879 Gm43372-201ENSMUST00000202662 3016 ntBASIC9.21□□□□□ -0.93
Hmgb3O54879 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC9.21□□□□□ -0.93
Hmgb3O54879 Phldb2-202ENSMUST00000076333 5347 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.93
Hmgb3O54879 Ryr1-201ENSMUST00000032813 15352 ntAPPRIS ALT2 TSL 5 BASIC9.21□□□□□ -0.93
Hmgb3O54879 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC9.21□□□□□ -0.93
Hmgb3O54879 Ak8-201ENSMUST00000074156 1567 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
Hmgb3O54879 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
Hmgb3O54879 Pdgfrb-202ENSMUST00000115274 5423 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.93
Hmgb3O54879 Acsl6-208ENSMUST00000108899 1662 ntTSL 1 (best) BASIC9.21□□□□□ -0.93
Hmgb3O54879 Ptprr-206ENSMUST00000148731 2511 ntAPPRIS ALT2 TSL 5 BASIC9.21□□□□□ -0.94
Hmgb3O54879 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC9.21□□□□□ -0.94
Hmgb3O54879 Rpap2-202ENSMUST00000112650 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Gm12390-201ENSMUST00000117897 397 ntBASIC9.21□□□□□ -0.94
Hmgb3O54879 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC9.21□□□□□ -0.94
Hmgb3O54879 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC9.21□□□□□ -0.94
Hmgb3O54879 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC9.21□□□□□ -0.94
Hmgb3O54879 Gm4607-201ENSMUST00000206649 577 ntBASIC9.21□□□□□ -0.94
Hmgb3O54879 AC159896.2-201ENSMUST00000214753 269 ntBASIC9.21□□□□□ -0.94
Hmgb3O54879 AC153954.1-201ENSMUST00000216959 255 ntBASIC9.21□□□□□ -0.94
Hmgb3O54879 CT571245.2-201ENSMUST00000218421 305 ntBASIC9.21□□□□□ -0.94
Hmgb3O54879 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC9.21□□□□□ -0.94
Hmgb3O54879 AC121960.1-201ENSMUST00000227982 564 ntBASIC9.21□□□□□ -0.94
Hmgb3O54879 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC9.21□□□□□ -0.94
Hmgb3O54879 Ndufab1-201ENSMUST00000033157 3479 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Pde1c-201ENSMUST00000044505 3907 ntAPPRIS P4 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Ctnnd1-214ENSMUST00000111688 6146 ntTSL 5 BASIC9.21□□□□□ -0.94
Hmgb3O54879 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Aox2-201ENSMUST00000114366 5771 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 AC164092.1-201ENSMUST00000215635 2232 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Gdi1-201ENSMUST00000015435 2666 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Elf2-206ENSMUST00000163748 2656 ntAPPRIS P3 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Slc18a1-201ENSMUST00000037478 3115 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Mettl16-205ENSMUST00000141755 12584 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 4930488L21Rik-202ENSMUST00000212638 3164 ntTSL 5 BASIC9.21□□□□□ -0.94
Hmgb3O54879 Pabpc4-201ENSMUST00000078734 2700 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Olfr239-202ENSMUST00000213731 3690 ntTSL 5 BASIC9.21□□□□□ -0.94
Hmgb3O54879 St5-201ENSMUST00000077909 4612 ntAPPRIS P4 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Gm44826-201ENSMUST00000207648 2332 ntBASIC9.21□□□□□ -0.94
Hmgb3O54879 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Cd300lg-201ENSMUST00000017453 2353 ntAPPRIS P3 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Commd1-204ENSMUST00000159081 4508 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Lrtm2-201ENSMUST00000068351 4001 ntAPPRIS P1 TSL 2 BASIC9.21□□□□□ -0.94
Hmgb3O54879 Prpf6-203ENSMUST00000136481 3048 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.94
Hmgb3O54879 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Lig3-203ENSMUST00000092849 4560 ntAPPRIS P3 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hmgb3O54879 Pcdha4-201ENSMUST00000192295 4129 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Ddr2-202ENSMUST00000170800 8289 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
Hmgb3O54879 Kpna6-202ENSMUST00000102590 5710 ntAPPRIS P2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Vmn1r199-202ENSMUST00000227685 5713 ntAPPRIS P2 BASIC9.2□□□□□ -0.94
Hmgb3O54879 Arhgap33os-201ENSMUST00000124276 2648 ntTSL 2 BASIC9.2□□□□□ -0.94
Hmgb3O54879 Gm37122-201ENSMUST00000195313 1567 ntBASIC9.2□□□□□ -0.94
Hmgb3O54879 4833411C07Rik-202ENSMUST00000207914 1568 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Slc1a2-201ENSMUST00000005220 2127 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Hps4-202ENSMUST00000112359 3345 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
Hmgb3O54879 Rnf38-201ENSMUST00000045793 5012 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Zhx3-201ENSMUST00000103111 9563 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Dcun1d2-204ENSMUST00000110840 2853 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Ccdc148-204ENSMUST00000226455 4612 ntAPPRIS ALT2 BASIC9.2□□□□□ -0.94
Hmgb3O54879 Sept9-204ENSMUST00000106349 2932 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Stam2-201ENSMUST00000102759 4717 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Fbxl5-202ENSMUST00000087465 4237 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Spata31d1a-201ENSMUST00000066510 4261 ntAPPRIS P1 TSL 2 BASIC9.2□□□□□ -0.94
Hmgb3O54879 Vps8-204ENSMUST00000117598 4935 ntAPPRIS P2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Tsc2-203ENSMUST00000226284 6266 ntAPPRIS ALT2 BASIC9.2□□□□□ -0.94
Hmgb3O54879 Hrh1-201ENSMUST00000088987 3782 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Rnf123-207ENSMUST00000160249 4426 ntAPPRIS P3 TSL 5 BASIC9.2□□□□□ -0.94
Hmgb3O54879 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
Hmgb3O54879 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Retrieved 100 of 76,532 protein–RNA pairs in 116.1 ms