Protein–RNA interactions for Protein: Q8CIK8

Rfwd3, E3 ubiquitin-protein ligase RFWD3, mousemouse

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfwd3Q8CIK8 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rfwd3Q8CIK8 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rfwd3Q8CIK8 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Rfwd3Q8CIK8 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfwd3Q8CIK8 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfwd3Q8CIK8 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfwd3Q8CIK8 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfwd3Q8CIK8 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC19.04■□□□□ 0.64
Rfwd3Q8CIK8 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC19.04■□□□□ 0.64
Rfwd3Q8CIK8 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfwd3Q8CIK8 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfwd3Q8CIK8 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfwd3Q8CIK8 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfwd3Q8CIK8 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfwd3Q8CIK8 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Rfwd3Q8CIK8 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rfwd3Q8CIK8 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rfwd3Q8CIK8 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Rfwd3Q8CIK8 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Rfwd3Q8CIK8 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC19.03■□□□□ 0.64
Rfwd3Q8CIK8 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC19.03■□□□□ 0.64
Rfwd3Q8CIK8 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC19.03■□□□□ 0.64
Rfwd3Q8CIK8 Gm7143-201ENSMUST00000222811 859 ntBASIC19.03■□□□□ 0.64
Rfwd3Q8CIK8 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Rfwd3Q8CIK8 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rfwd3Q8CIK8 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfwd3Q8CIK8 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Rfwd3Q8CIK8 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC19.02■□□□□ 0.64
Rfwd3Q8CIK8 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfwd3Q8CIK8 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Rfwd3Q8CIK8 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
Rfwd3Q8CIK8 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC19.02■□□□□ 0.64
Rfwd3Q8CIK8 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfwd3Q8CIK8 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfwd3Q8CIK8 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rfwd3Q8CIK8 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Rfwd3Q8CIK8 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfwd3Q8CIK8 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Rfwd3Q8CIK8 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfwd3Q8CIK8 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.01■□□□□ 0.63
Rfwd3Q8CIK8 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfwd3Q8CIK8 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Rfwd3Q8CIK8 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfwd3Q8CIK8 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC19.01■□□□□ 0.63
Rfwd3Q8CIK8 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Rfwd3Q8CIK8 Gm9870-201ENSMUST00000063874 645 ntBASIC19.01■□□□□ 0.63
Rfwd3Q8CIK8 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfwd3Q8CIK8 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.01■□□□□ 0.63
Rfwd3Q8CIK8 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfwd3Q8CIK8 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rfwd3Q8CIK8 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
Rfwd3Q8CIK8 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC19■□□□□ 0.63
Rfwd3Q8CIK8 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC19■□□□□ 0.63
Rfwd3Q8CIK8 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Rfwd3Q8CIK8 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rfwd3Q8CIK8 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rfwd3Q8CIK8 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rfwd3Q8CIK8 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfwd3Q8CIK8 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfwd3Q8CIK8 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfwd3Q8CIK8 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Rfwd3Q8CIK8 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
Rfwd3Q8CIK8 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Rfwd3Q8CIK8 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfwd3Q8CIK8 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfwd3Q8CIK8 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfwd3Q8CIK8 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfwd3Q8CIK8 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
Rfwd3Q8CIK8 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfwd3Q8CIK8 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Rfwd3Q8CIK8 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Rfwd3Q8CIK8 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC18.98■□□□□ 0.63
Rfwd3Q8CIK8 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.98■□□□□ 0.63
Rfwd3Q8CIK8 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfwd3Q8CIK8 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfwd3Q8CIK8 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfwd3Q8CIK8 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfwd3Q8CIK8 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfwd3Q8CIK8 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
Rfwd3Q8CIK8 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfwd3Q8CIK8 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfwd3Q8CIK8 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfwd3Q8CIK8 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Rfwd3Q8CIK8 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Rfwd3Q8CIK8 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfwd3Q8CIK8 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfwd3Q8CIK8 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC18.97■□□□□ 0.63
Rfwd3Q8CIK8 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfwd3Q8CIK8 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC18.96■□□□□ 0.63
Rfwd3Q8CIK8 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC18.96■□□□□ 0.63
Rfwd3Q8CIK8 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC18.96■□□□□ 0.63
Rfwd3Q8CIK8 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfwd3Q8CIK8 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfwd3Q8CIK8 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfwd3Q8CIK8 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfwd3Q8CIK8 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Rfwd3Q8CIK8 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Rfwd3Q8CIK8 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Rfwd3Q8CIK8 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Rfwd3Q8CIK8 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 59.2 ms