Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
RFC4P35249 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
RFC4P35249 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC28.9■■■□□ 2.22
RFC4P35249 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
RFC4P35249 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC28.9■■■□□ 2.22
RFC4P35249 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC28.9■■■□□ 2.22
RFC4P35249 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC28.9■■■□□ 2.22
RFC4P35249 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC28.9■■■□□ 2.22
RFC4P35249 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC28.89■■■□□ 2.22
RFC4P35249 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
RFC4P35249 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
RFC4P35249 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
RFC4P35249 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
RFC4P35249 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC28.89■■■□□ 2.22
RFC4P35249 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC28.89■■■□□ 2.22
RFC4P35249 AL358852.1-201ENST00000623174 1268 ntBASIC28.89■■■□□ 2.22
RFC4P35249 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC28.89■■■□□ 2.22
RFC4P35249 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
RFC4P35249 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC28.89■■■□□ 2.21
RFC4P35249 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.21
RFC4P35249 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC28.88■■■□□ 2.21
RFC4P35249 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
RFC4P35249 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC28.88■■■□□ 2.21
RFC4P35249 AC004911.1-201ENST00000416316 871 ntBASIC28.88■■■□□ 2.21
RFC4P35249 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC28.88■■■□□ 2.21
RFC4P35249 AICDA-202ENST00000537228 667 ntTSL 5 BASIC28.88■■■□□ 2.21
RFC4P35249 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC28.88■■■□□ 2.21
RFC4P35249 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC28.88■■■□□ 2.21
RFC4P35249 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC28.88■■■□□ 2.21
RFC4P35249 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
RFC4P35249 AC027612.3-201ENST00000413684 1047 ntBASIC28.87■■■□□ 2.21
RFC4P35249 AC123595.1-201ENST00000440769 1046 ntBASIC28.87■■■□□ 2.21
RFC4P35249 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
RFC4P35249 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC28.87■■■□□ 2.21
RFC4P35249 GTSE1-AS1-202ENST00000623117 1518 ntBASIC28.87■■■□□ 2.21
RFC4P35249 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC28.86■■■□□ 2.21
RFC4P35249 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
RFC4P35249 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC28.86■■■□□ 2.21
RFC4P35249 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
RFC4P35249 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
RFC4P35249 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC28.86■■■□□ 2.21
RFC4P35249 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
RFC4P35249 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC28.86■■■□□ 2.21
RFC4P35249 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC28.86■■■□□ 2.21
RFC4P35249 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
RFC4P35249 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
RFC4P35249 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC28.85■■■□□ 2.21
RFC4P35249 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC28.85■■■□□ 2.21
RFC4P35249 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC28.85■■■□□ 2.21
RFC4P35249 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC28.85■■■□□ 2.21
RFC4P35249 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
RFC4P35249 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
RFC4P35249 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC28.84■■■□□ 2.21
RFC4P35249 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC28.84■■■□□ 2.21
RFC4P35249 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
RFC4P35249 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC28.84■■■□□ 2.21
RFC4P35249 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC28.84■■■□□ 2.21
RFC4P35249 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC28.83■■■□□ 2.21
RFC4P35249 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC28.83■■■□□ 2.21
RFC4P35249 DLX3-202ENST00000512495 834 ntTSL 2 BASIC28.83■■■□□ 2.21
RFC4P35249 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC28.83■■■□□ 2.21
RFC4P35249 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
RFC4P35249 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
RFC4P35249 USF2-207ENST00000595068 1612 ntTSL 5 BASIC28.83■■■□□ 2.21
RFC4P35249 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC28.82■■■□□ 2.2
RFC4P35249 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC28.82■■■□□ 2.2
RFC4P35249 MIR6084-201ENST00000622012 110 ntBASIC28.82■■■□□ 2.2
RFC4P35249 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC28.82■■■□□ 2.2
RFC4P35249 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC28.82■■■□□ 2.2
RFC4P35249 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC28.82■■■□□ 2.2
RFC4P35249 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
RFC4P35249 LSR-205ENST00000427250 1606 ntTSL 2 BASIC28.81■■■□□ 2.2
RFC4P35249 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
RFC4P35249 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
RFC4P35249 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
RFC4P35249 ID1-201ENST00000376105 1233 ntBASIC28.81■■■□□ 2.2
RFC4P35249 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC28.81■■■□□ 2.2
RFC4P35249 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
RFC4P35249 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC28.81■■■□□ 2.2
RFC4P35249 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
RFC4P35249 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC28.8■■■□□ 2.2
RFC4P35249 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC28.8■■■□□ 2.2
RFC4P35249 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC28.8■■■□□ 2.2
RFC4P35249 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC28.8■■■□□ 2.2
RFC4P35249 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC28.8■■■□□ 2.2
RFC4P35249 MIR572-201ENST00000384983 95 ntBASIC28.8■■■□□ 2.2
RFC4P35249 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC28.8■■■□□ 2.2
RFC4P35249 GXYLT1P2-201ENST00000433312 1230 ntBASIC28.8■■■□□ 2.2
RFC4P35249 IGHV3-19-201ENST00000521488 291 ntBASIC28.8■■■□□ 2.2
RFC4P35249 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC28.8■■■□□ 2.2
RFC4P35249 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC28.79■■■□□ 2.2
RFC4P35249 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC28.79■■■□□ 2.2
RFC4P35249 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
RFC4P35249 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
RFC4P35249 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC28.78■■■□□ 2.2
RFC4P35249 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC28.78■■■□□ 2.2
RFC4P35249 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC28.78■■■□□ 2.2
RFC4P35249 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC28.78■■■□□ 2.2
RFC4P35249 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC28.78■■■□□ 2.2
RFC4P35249 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC28.78■■■□□ 2.2
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms