Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.69■□□□□ 0.58
Col5a1O88207 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC18.69■□□□□ 0.58
Col5a1O88207 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col5a1O88207 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col5a1O88207 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col5a1O88207 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col5a1O88207 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Col5a1O88207 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col5a1O88207 Gm40848-201ENSMUST00000221998 324 ntBASIC18.68■□□□□ 0.58
Col5a1O88207 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col5a1O88207 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Col5a1O88207 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col5a1O88207 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col5a1O88207 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col5a1O88207 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col5a1O88207 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col5a1O88207 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC18.67■□□□□ 0.58
Col5a1O88207 Gm43060-201ENSMUST00000200621 289 ntBASIC18.67■□□□□ 0.58
Col5a1O88207 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col5a1O88207 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC18.67■□□□□ 0.58
Col5a1O88207 Gm17641-201ENSMUST00000166328 2350 ntBASIC18.67■□□□□ 0.58
Col5a1O88207 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col5a1O88207 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col5a1O88207 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col5a1O88207 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col5a1O88207 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC18.67■□□□□ 0.58
Col5a1O88207 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col5a1O88207 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col5a1O88207 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col5a1O88207 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Col5a1O88207 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.66■□□□□ 0.58
Col5a1O88207 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.66■□□□□ 0.58
Col5a1O88207 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC18.66■□□□□ 0.58
Col5a1O88207 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col5a1O88207 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col5a1O88207 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col5a1O88207 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col5a1O88207 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col5a1O88207 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col5a1O88207 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col5a1O88207 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col5a1O88207 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Col5a1O88207 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC18.64■□□□□ 0.57
Col5a1O88207 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col5a1O88207 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col5a1O88207 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col5a1O88207 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col5a1O88207 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col5a1O88207 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col5a1O88207 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col5a1O88207 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col5a1O88207 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col5a1O88207 AC164883.3-201ENSMUST00000227396 1774 ntBASIC18.63■□□□□ 0.57
Col5a1O88207 Gm18671-201ENSMUST00000214826 683 ntBASIC18.63■□□□□ 0.57
Col5a1O88207 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Col5a1O88207 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col5a1O88207 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col5a1O88207 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col5a1O88207 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.63■□□□□ 0.57
Col5a1O88207 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
Col5a1O88207 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col5a1O88207 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col5a1O88207 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Col5a1O88207 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col5a1O88207 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col5a1O88207 Nespas-201ENSMUST00000143738 1083 ntBASIC18.62■□□□□ 0.57
Col5a1O88207 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.62■□□□□ 0.57
Col5a1O88207 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC18.62■□□□□ 0.57
Col5a1O88207 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col5a1O88207 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col5a1O88207 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col5a1O88207 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col5a1O88207 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC18.62■□□□□ 0.57
Col5a1O88207 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col5a1O88207 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col5a1O88207 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col5a1O88207 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col5a1O88207 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col5a1O88207 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Col5a1O88207 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col5a1O88207 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col5a1O88207 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC18.6■□□□□ 0.57
Col5a1O88207 AV356131-201ENSMUST00000206201 750 ntBASIC18.6■□□□□ 0.57
Col5a1O88207 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col5a1O88207 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col5a1O88207 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col5a1O88207 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col5a1O88207 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col5a1O88207 Gm43403-201ENSMUST00000198011 1786 ntBASIC18.6■□□□□ 0.57
Col5a1O88207 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC18.6■□□□□ 0.57
Col5a1O88207 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col5a1O88207 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col5a1O88207 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col5a1O88207 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC18.59■□□□□ 0.57
Col5a1O88207 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col5a1O88207 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col5a1O88207 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col5a1O88207 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col5a1O88207 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col5a1O88207 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms