Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC9.26□□□□□ -0.93
Cdx1P18111 Gtf3c6-206ENSMUST00000217537 2526 ntAPPRIS P2 TSL 1 (best) BASIC9.26□□□□□ -0.93
Cdx1P18111 Galnt16-206ENSMUST00000219993 4222 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Cdx1P18111 Rsl24d1-201ENSMUST00000034738 1543 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Cdx1P18111 Kcnip3-203ENSMUST00000103215 2732 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Kcnip3-201ENSMUST00000028850 2728 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Slfn1-201ENSMUST00000037994 1864 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Ipo7-201ENSMUST00000084731 4763 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Phf8-211ENSMUST00000168501 6359 ntAPPRIS ALT2 TSL 5 BASIC9.25□□□□□ -0.93
Cdx1P18111 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC9.25□□□□□ -0.93
Cdx1P18111 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC9.25□□□□□ -0.93
Cdx1P18111 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Trmt2a-207ENSMUST00000140206 3520 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC9.25□□□□□ -0.93
Cdx1P18111 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Col4a3-201ENSMUST00000113457 8554 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Gm4884-201ENSMUST00000164422 2852 ntAPPRIS P1 TSL 2 BASIC9.25□□□□□ -0.93
Cdx1P18111 Gm37451-201ENSMUST00000194718 2167 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC9.25□□□□□ -0.93
Cdx1P18111 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC9.25□□□□□ -0.93
Cdx1P18111 Gm13492-201ENSMUST00000119772 665 ntBASIC9.25□□□□□ -0.93
Cdx1P18111 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC9.25□□□□□ -0.93
Cdx1P18111 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Gm15276-201ENSMUST00000145953 498 ntBASIC9.25□□□□□ -0.93
Cdx1P18111 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC9.25□□□□□ -0.93
Cdx1P18111 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC9.25□□□□□ -0.93
Cdx1P18111 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC9.25□□□□□ -0.93
Cdx1P18111 Gm8176-201ENSMUST00000191297 1099 ntBASIC9.25□□□□□ -0.93
Cdx1P18111 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC9.25□□□□□ -0.93
Cdx1P18111 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC9.25□□□□□ -0.93
Cdx1P18111 Gm9004-201ENSMUST00000218739 1222 ntBASIC9.25□□□□□ -0.93
Cdx1P18111 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC9.25□□□□□ -0.93
Cdx1P18111 Gm18615-201ENSMUST00000222919 1031 ntBASIC9.25□□□□□ -0.93
Cdx1P18111 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Atxn1-201ENSMUST00000091628 10569 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 AC153380.1-201ENSMUST00000214959 2364 ntBASIC9.25□□□□□ -0.93
Cdx1P18111 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 AC167022.1-201ENSMUST00000218647 1458 ntBASIC9.25□□□□□ -0.93
Cdx1P18111 Copb1-201ENSMUST00000033012 3346 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC9.25□□□□□ -0.93
Cdx1P18111 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC9.25□□□□□ -0.93
Cdx1P18111 Cacna1c-219ENSMUST00000189389 6603 ntAPPRIS ALT2 TSL 5 BASIC9.25□□□□□ -0.93
Cdx1P18111 Itgad-201ENSMUST00000033051 3965 ntAPPRIS P2 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Dmtn-203ENSMUST00000110984 4176 ntAPPRIS P2 TSL 5 BASIC9.25□□□□□ -0.93
Cdx1P18111 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Gm19680-201ENSMUST00000095050 1513 ntBASIC9.25□□□□□ -0.93
Cdx1P18111 Snd1-201ENSMUST00000001460 3482 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Gfra2-201ENSMUST00000022699 3472 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Ebf2-203ENSMUST00000176161 5204 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Abt1-201ENSMUST00000041782 4456 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
Cdx1P18111 Tom1l2-203ENSMUST00000093048 4864 ntTSL 5 BASIC9.25□□□□□ -0.93
Cdx1P18111 Dnmbp-206ENSMUST00000212592 3901 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Gm33914-201ENSMUST00000214108 2150 ntTSL 5 BASIC9.24□□□□□ -0.93
Cdx1P18111 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 St5-204ENSMUST00000168005 3004 ntAPPRIS ALT2 TSL 5 BASIC9.24□□□□□ -0.93
Cdx1P18111 Ifih1-201ENSMUST00000028259 5470 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Krba1-201ENSMUST00000031815 3685 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Pde6c-202ENSMUST00000112329 2895 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Arfgap3-202ENSMUST00000226124 2461 ntAPPRIS ALT2 BASIC9.24□□□□□ -0.93
Cdx1P18111 Pkp4-201ENSMUST00000037903 4378 ntTSL 5 BASIC9.24□□□□□ -0.93
Cdx1P18111 Sgk3-203ENSMUST00000168907 3779 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Hnrnpc-210ENSMUST00000228232 2535 ntAPPRIS P5 BASIC9.24□□□□□ -0.93
Cdx1P18111 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Gm2606-201ENSMUST00000100754 1002 ntBASIC9.24□□□□□ -0.93
Cdx1P18111 Snord83b-201ENSMUST00000104546 94 ntBASIC9.24□□□□□ -0.93
Cdx1P18111 Ablim2-204ENSMUST00000114204 2953 ntAPPRIS ALT2 TSL 5 BASIC9.24□□□□□ -0.93
Cdx1P18111 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC9.24□□□□□ -0.93
Cdx1P18111 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC9.24□□□□□ -0.93
Cdx1P18111 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC9.24□□□□□ -0.93
Cdx1P18111 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC9.24□□□□□ -0.93
Cdx1P18111 Gm16505-201ENSMUST00000179981 232 ntBASIC9.24□□□□□ -0.93
Cdx1P18111 Gm5869-201ENSMUST00000200248 1257 ntBASIC9.24□□□□□ -0.93
Cdx1P18111 Rps4l-202ENSMUST00000204242 789 ntBASIC9.24□□□□□ -0.93
Cdx1P18111 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Gm45682-201ENSMUST00000209434 1256 ntTSL 5 BASIC9.24□□□□□ -0.93
Cdx1P18111 Gm7293-201ENSMUST00000216682 1007 ntBASIC9.24□□□□□ -0.93
Cdx1P18111 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC9.24□□□□□ -0.93
Cdx1P18111 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Gpsm1-201ENSMUST00000066889 3432 ntAPPRIS ALT2 TSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 AC165148.1-201ENSMUST00000224795 2372 ntBASIC9.24□□□□□ -0.93
Cdx1P18111 Prkd2-202ENSMUST00000168093 3251 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Cdx1P18111 Gfm2-201ENSMUST00000022170 3089 ntAPPRIS ALT2 TSL 2 BASIC9.24□□□□□ -0.93
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms