Protein–RNA interactions for Protein: P09026

Hoxb3, Homeobox protein Hox-B3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxb3P09026 Gm5507-201ENSMUST00000091897 1008 ntBASIC11.73□□□□□ -0.53
Hoxb3P09026 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hoxb3P09026 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hoxb3P09026 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hoxb3P09026 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Hoxb3P09026 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Hoxb3P09026 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hoxb3P09026 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Hoxb3P09026 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm10728-201ENSMUST00000194292 1829 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Hoxb3P09026 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm8155-201ENSMUST00000216363 1612 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC11.72□□□□□ -0.53
Hoxb3P09026 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Pcgf5-211ENSMUST00000225920 6443 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm13171-201ENSMUST00000117233 391 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm14892-201ENSMUST00000117636 267 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm12788-201ENSMUST00000119090 308 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm7350-201ENSMUST00000120964 636 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm23776-201ENSMUST00000158993 325 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm7627-201ENSMUST00000183205 999 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Mir6407-201ENSMUST00000184510 101 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 1700001J11Rik-201ENSMUST00000185917 759 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm28342-201ENSMUST00000190308 589 ntTSL 3 BASIC11.72□□□□□ -0.53
Hoxb3P09026 9530003O04Rik-201ENSMUST00000192663 908 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Ighv5-1-201ENSMUST00000193324 353 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 4930533L02Rik-201ENSMUST00000194425 1160 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm43531-201ENSMUST00000200676 1114 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm3017-201ENSMUST00000203603 1126 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm6331-201ENSMUST00000217890 450 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 AC116589.9-201ENSMUST00000221462 908 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Hpf1-201ENSMUST00000037190 1191 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Hoxb3P09026 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 AU016765-201ENSMUST00000097295 946 ntTSL 2 BASIC11.72□□□□□ -0.53
Hoxb3P09026 Olfr1061-201ENSMUST00000099889 942 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Hoxb3P09026 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Hoxb3P09026 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm44414-201ENSMUST00000203660 2109 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC11.72□□□□□ -0.53
Hoxb3P09026 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC11.72□□□□□ -0.53
Hoxb3P09026 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm42706-201ENSMUST00000199733 1910 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm10652-201ENSMUST00000199790 2622 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Gm14132-201ENSMUST00000117188 1719 ntBASIC11.72□□□□□ -0.53
Hoxb3P09026 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
Hoxb3P09026 4921507G05Rik-201ENSMUST00000181348 1653 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 Cap2-202ENSMUST00000119341 2454 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC11.71□□□□□ -0.53
Hoxb3P09026 Gm13910-201ENSMUST00000121752 1428 ntBASIC11.71□□□□□ -0.53
Hoxb3P09026 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Hoxb3P09026 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
Hoxb3P09026 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Hoxb3P09026 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC11.71□□□□□ -0.53
Hoxb3P09026 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 Gm12579-201ENSMUST00000118040 783 ntBASIC11.71□□□□□ -0.53
Hoxb3P09026 Gm11877-201ENSMUST00000118921 852 ntBASIC11.71□□□□□ -0.53
Hoxb3P09026 Gm15725-201ENSMUST00000119947 1090 ntBASIC11.71□□□□□ -0.53
Hoxb3P09026 Hoxd3os1-203ENSMUST00000145799 511 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 4930519D14Rik-201ENSMUST00000151471 1137 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 4930486I03Rik-201ENSMUST00000161509 788 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxb3P09026 Olfr772-201ENSMUST00000169800 1004 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Hoxb3P09026 Gm20641-201ENSMUST00000176069 615 ntTSL 3 BASIC11.71□□□□□ -0.53
Hoxb3P09026 Gm13147-202ENSMUST00000177526 1173 ntBASIC11.71□□□□□ -0.53
Hoxb3P09026 Gm3047-202ENSMUST00000177998 618 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Hoxb3P09026 Gm8297-203ENSMUST00000178389 618 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Hoxb3P09026 Gm3460-202ENSMUST00000178927 618 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Hoxb3P09026 Gm21103-203ENSMUST00000179042 618 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms