Protein–RNA interactions for Protein: O88427

Cacna1h, Voltage-dependent T-type calcium channel subunit alpha-1H, mousemouse

Predictions only

Length 2,365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1hO88427 Gm13836-201ENSMUST00000121159 501 ntBASIC20.28■□□□□ 0.84
Cacna1hO88427 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cacna1hO88427 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cacna1hO88427 Gm11421-201ENSMUST00000122124 294 ntBASIC20.27■□□□□ 0.84
Cacna1hO88427 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Cacna1hO88427 Reep4-203ENSMUST00000226563 1444 ntBASIC20.27■□□□□ 0.84
Cacna1hO88427 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Cacna1hO88427 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.27■□□□□ 0.83
Cacna1hO88427 Gm13168-201ENSMUST00000121771 632 ntBASIC20.27■□□□□ 0.83
Cacna1hO88427 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.27■□□□□ 0.83
Cacna1hO88427 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.83
Cacna1hO88427 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20.27■□□□□ 0.83
Cacna1hO88427 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cacna1hO88427 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cacna1hO88427 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.26■□□□□ 0.83
Cacna1hO88427 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.26■□□□□ 0.83
Cacna1hO88427 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cacna1hO88427 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Cacna1hO88427 Gm13234-201ENSMUST00000120010 747 ntBASIC20.26■□□□□ 0.83
Cacna1hO88427 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.26■□□□□ 0.83
Cacna1hO88427 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Cacna1hO88427 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Cacna1hO88427 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cacna1hO88427 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cacna1hO88427 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Cacna1hO88427 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cacna1hO88427 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC20.25■□□□□ 0.83
Cacna1hO88427 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cacna1hO88427 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cacna1hO88427 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cacna1hO88427 Gm20049-201ENSMUST00000219950 730 ntBASIC20.24■□□□□ 0.83
Cacna1hO88427 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Cacna1hO88427 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cacna1hO88427 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Cacna1hO88427 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Cacna1hO88427 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cacna1hO88427 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Cacna1hO88427 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Cacna1hO88427 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.24■□□□□ 0.83
Cacna1hO88427 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cacna1hO88427 Gm37856-201ENSMUST00000191634 999 ntBASIC20.23■□□□□ 0.83
Cacna1hO88427 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cacna1hO88427 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cacna1hO88427 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.23■□□□□ 0.83
Cacna1hO88427 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cacna1hO88427 Gm3807-201ENSMUST00000193520 1168 ntBASIC20.23■□□□□ 0.83
Cacna1hO88427 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC20.23■□□□□ 0.83
Cacna1hO88427 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Cacna1hO88427 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.22■□□□□ 0.83
Cacna1hO88427 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cacna1hO88427 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cacna1hO88427 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cacna1hO88427 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC20.22■□□□□ 0.83
Cacna1hO88427 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.22■□□□□ 0.83
Cacna1hO88427 AC166356.1-201ENSMUST00000228236 1426 ntBASIC20.22■□□□□ 0.83
Cacna1hO88427 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cacna1hO88427 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cacna1hO88427 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cacna1hO88427 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cacna1hO88427 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cacna1hO88427 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cacna1hO88427 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.21■□□□□ 0.83
Cacna1hO88427 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC20.21■□□□□ 0.83
Cacna1hO88427 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cacna1hO88427 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cacna1hO88427 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cacna1hO88427 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cacna1hO88427 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cacna1hO88427 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Cacna1hO88427 Gm10812-201ENSMUST00000099864 546 ntBASIC20.21■□□□□ 0.83
Cacna1hO88427 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cacna1hO88427 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cacna1hO88427 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cacna1hO88427 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cacna1hO88427 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cacna1hO88427 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cacna1hO88427 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cacna1hO88427 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Cacna1hO88427 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
Cacna1hO88427 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Cacna1hO88427 Gm7514-201ENSMUST00000209475 934 ntBASIC20.19■□□□□ 0.82
Cacna1hO88427 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cacna1hO88427 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
Cacna1hO88427 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC20.19■□□□□ 0.82
Cacna1hO88427 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cacna1hO88427 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cacna1hO88427 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cacna1hO88427 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cacna1hO88427 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cacna1hO88427 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cacna1hO88427 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cacna1hO88427 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC20.17■□□□□ 0.82
Cacna1hO88427 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cacna1hO88427 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC20.17■□□□□ 0.82
Cacna1hO88427 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cacna1hO88427 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cacna1hO88427 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cacna1hO88427 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cacna1hO88427 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cacna1hO88427 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms