Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Hmgb3O54879 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Hmgb3O54879 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Hmgb3O54879 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Hmgb3O54879 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC16.93■□□□□ 0.3
Hmgb3O54879 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Hmgb3O54879 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Hmgb3O54879 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Hmgb3O54879 Golph3-202ENSMUST00000226517 2359 ntBASIC16.93■□□□□ 0.3
Hmgb3O54879 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
Hmgb3O54879 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Hmgb3O54879 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Hmgb3O54879 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Hmgb3O54879 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Hmgb3O54879 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Hmgb3O54879 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
Hmgb3O54879 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Hmgb3O54879 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Hmgb3O54879 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC16.92■□□□□ 0.3
Hmgb3O54879 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Hmgb3O54879 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Hmgb3O54879 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC16.91■□□□□ 0.3
Hmgb3O54879 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Hmgb3O54879 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Hmgb3O54879 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Hmgb3O54879 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Hmgb3O54879 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Hmgb3O54879 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC16.91■□□□□ 0.3
Hmgb3O54879 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Hmgb3O54879 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Hmgb3O54879 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Hmgb3O54879 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Hmgb3O54879 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Hmgb3O54879 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Hmgb3O54879 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC16.9■□□□□ 0.3
Hmgb3O54879 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Hmgb3O54879 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Hmgb3O54879 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Hmgb3O54879 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Hmgb3O54879 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Hmgb3O54879 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Hmgb3O54879 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Hmgb3O54879 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.3
Hmgb3O54879 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Hmgb3O54879 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Hmgb3O54879 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Hmgb3O54879 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Hmgb3O54879 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Hmgb3O54879 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Hmgb3O54879 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Hmgb3O54879 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Hmgb3O54879 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Hmgb3O54879 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Hmgb3O54879 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Hmgb3O54879 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Hmgb3O54879 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Hmgb3O54879 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Hmgb3O54879 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Hmgb3O54879 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Hmgb3O54879 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Hmgb3O54879 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Hmgb3O54879 Gm4430-201ENSMUST00000192413 1943 ntBASIC16.88■□□□□ 0.29
Hmgb3O54879 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb3O54879 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb3O54879 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb3O54879 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Hmgb3O54879 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb3O54879 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb3O54879 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb3O54879 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Hmgb3O54879 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb3O54879 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb3O54879 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Hmgb3O54879 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb3O54879 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb3O54879 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb3O54879 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Hmgb3O54879 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb3O54879 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb3O54879 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb3O54879 Gm8503-201ENSMUST00000118131 455 ntBASIC16.85■□□□□ 0.29
Hmgb3O54879 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC16.85■□□□□ 0.29
Hmgb3O54879 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb3O54879 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb3O54879 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb3O54879 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb3O54879 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC16.85■□□□□ 0.29
Hmgb3O54879 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb3O54879 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Hmgb3O54879 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb3O54879 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb3O54879 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb3O54879 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb3O54879 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Hmgb3O54879 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Hmgb3O54879 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb3O54879 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb3O54879 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Hmgb3O54879 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb3O54879 Pkd1-207ENSMUST00000228550 1050 ntBASIC16.84■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 12.5 ms