Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ift172-201ENSMUST00000041565 5403 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Peg10-201ENSMUST00000166678 6662 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
Hmgb3O54879 Atl2-202ENSMUST00000112437 3371 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC9.59□□□□□ -0.87
Hmgb3O54879 Gm43931-201ENSMUST00000204817 2870 ntBASIC9.59□□□□□ -0.87
Hmgb3O54879 Mrrf-201ENSMUST00000028250 2623 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Ldlr-201ENSMUST00000034713 4627 ntAPPRIS P2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC9.59□□□□□ -0.87
Hmgb3O54879 Ap1b1-201ENSMUST00000009234 4085 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Esr2-205ENSMUST00000218621 3342 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC9.59□□□□□ -0.87
Hmgb3O54879 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Gm17746-201ENSMUST00000223429 3772 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Gm19656-201ENSMUST00000208543 4610 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Hmgb3O54879 Slit2-208ENSMUST00000173107 9960 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.88
Hmgb3O54879 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Gm6560-201ENSMUST00000198588 1591 ntBASIC9.58□□□□□ -0.88
Hmgb3O54879 Gm38292-201ENSMUST00000192646 3045 ntBASIC9.58□□□□□ -0.88
Hmgb3O54879 Traf3-202ENSMUST00000060274 6896 ntTSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Olfr1410-202ENSMUST00000216553 5433 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Tmem88b-201ENSMUST00000097742 3471 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Spata5-201ENSMUST00000029277 2890 ntAPPRIS P3 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Ank3-206ENSMUST00000092434 5886 ntAPPRIS P4 TSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Fam234b-201ENSMUST00000111915 4221 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Prkd2-202ENSMUST00000168093 3251 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Cfap46-202ENSMUST00000129990 8180 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Gm23912-201ENSMUST00000104687 87 ntBASIC9.58□□□□□ -0.88
Hmgb3O54879 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Gm7488-201ENSMUST00000117148 684 ntBASIC9.58□□□□□ -0.88
Hmgb3O54879 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Cdca2-207ENSMUST00000163100 3841 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Ccdc141-207ENSMUST00000164114 6222 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Mrgpre-201ENSMUST00000054048 3761 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Gprin3-201ENSMUST00000051065 8339 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Trpc6-203ENSMUST00000217462 3168 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Gm43522-201ENSMUST00000196697 1922 ntBASIC9.58□□□□□ -0.88
Hmgb3O54879 Ank3-242ENSMUST00000183261 4999 ntTSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Pnpla3-201ENSMUST00000045289 4640 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Mkx-201ENSMUST00000079788 3202 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 Gm28719-201ENSMUST00000187779 1757 ntBASIC9.58□□□□□ -0.88
Hmgb3O54879 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC9.58□□□□□ -0.88
Hmgb3O54879 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Hmgb3O54879 4632404M16Rik-201ENSMUST00000197326 2882 ntBASIC9.57□□□□□ -0.88
Hmgb3O54879 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC9.57□□□□□ -0.88
Hmgb3O54879 Gm13050-201ENSMUST00000122149 1345 ntBASIC9.57□□□□□ -0.88
Hmgb3O54879 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Gm32036-201ENSMUST00000221484 2638 ntTSL 2 BASIC9.57□□□□□ -0.88
Hmgb3O54879 Chd7-206ENSMUST00000170391 3462 ntTSL 5 BASIC9.57□□□□□ -0.88
Hmgb3O54879 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Gm9796-201ENSMUST00000062249 2250 ntBASIC9.57□□□□□ -0.88
Hmgb3O54879 Ttll13-201ENSMUST00000058266 3010 ntAPPRIS P1 TSL 5 BASIC9.57□□□□□ -0.88
Hmgb3O54879 Slc9a8-202ENSMUST00000073873 4429 ntAPPRIS ALT2 TSL 5 BASIC9.57□□□□□ -0.88
Hmgb3O54879 Gm8146-201ENSMUST00000192106 1847 ntBASIC9.57□□□□□ -0.88
Hmgb3O54879 Slc20a1-201ENSMUST00000028880 3316 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Zfat-204ENSMUST00000162054 4386 ntAPPRIS ALT2 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC9.57□□□□□ -0.88
Hmgb3O54879 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC9.57□□□□□ -0.88
Hmgb3O54879 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC9.57□□□□□ -0.88
Hmgb3O54879 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC9.57□□□□□ -0.88
Hmgb3O54879 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC9.57□□□□□ -0.88
Hmgb3O54879 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC9.57□□□□□ -0.88
Hmgb3O54879 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC9.57□□□□□ -0.88
Hmgb3O54879 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
Hmgb3O54879 Gm4271-201ENSMUST00000174444 973 ntBASIC9.57□□□□□ -0.88
Hmgb3O54879 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC9.57□□□□□ -0.88
Hmgb3O54879 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
Retrieved 100 of 76,532 protein–RNA pairs in 207.1 ms