Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC12.66□□□□□ -0.38
Trim54Q9ERP3 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Gm15172-201ENSMUST00000118945 1046 ntBASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Gm12036-201ENSMUST00000120008 530 ntBASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Gm14441-201ENSMUST00000121960 540 ntBASIC12.66□□□□□ -0.38
Trim54Q9ERP3 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC12.66□□□□□ -0.38
Trim54Q9ERP3 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Gm17877-201ENSMUST00000192578 814 ntBASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Gm37981-201ENSMUST00000194280 535 ntBASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 AC166341.2-201ENSMUST00000220571 120 ntBASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Gm9873-201ENSMUST00000063891 1097 ntBASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Olfr1350-201ENSMUST00000070985 927 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Olfr584-201ENSMUST00000098210 964 ntBASIC12.66□□□□□ -0.38
Trim54Q9ERP3 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trim54Q9ERP3 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Gm5053-201ENSMUST00000208361 1678 ntBASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Gm42706-201ENSMUST00000199733 1910 ntBASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Gm26013-201ENSMUST00000104404 119 ntBASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Gm12856-201ENSMUST00000119471 1293 ntBASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Gm4879-201ENSMUST00000122190 1272 ntBASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Gm29155-201ENSMUST00000185910 269 ntBASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Gm37028-201ENSMUST00000194276 107 ntBASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Gm8342-201ENSMUST00000209839 757 ntBASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trim54Q9ERP3 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Trim54Q9ERP3 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Gm14942-201ENSMUST00000119642 336 ntBASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC12.64□□□□□ -0.39
Trim54Q9ERP3 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 71.6 ms