Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
COL8A1P27658 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC12.94□□□□□ -0.34
COL8A1P27658 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
COL8A1P27658 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
COL8A1P27658 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC12.94□□□□□ -0.34
COL8A1P27658 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 UROS-201ENST00000368774 744 ntTSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC12.94□□□□□ -0.34
COL8A1P27658 KATNBL1P2-201ENST00000433311 835 ntBASIC12.94□□□□□ -0.34
COL8A1P27658 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC12.94□□□□□ -0.34
COL8A1P27658 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC12.94□□□□□ -0.34
COL8A1P27658 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC12.94□□□□□ -0.34
COL8A1P27658 FAM86B3P-203ENST00000523992 854 ntBASIC12.94□□□□□ -0.34
COL8A1P27658 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC12.94□□□□□ -0.34
COL8A1P27658 RN7SL470P-201ENST00000583069 259 ntBASIC12.94□□□□□ -0.34
COL8A1P27658 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC12.94□□□□□ -0.34
COL8A1P27658 HPN-206ENST00000597419 1212 ntTSL 5 BASIC12.94□□□□□ -0.34
COL8A1P27658 AC005041.3-201ENST00000606287 649 ntBASIC12.94□□□□□ -0.34
COL8A1P27658 AL139339.2-201ENST00000608063 657 ntBASIC12.94□□□□□ -0.34
COL8A1P27658 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
COL8A1P27658 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.94□□□□□ -0.34
COL8A1P27658 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
COL8A1P27658 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL8A1P27658 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC12.94□□□□□ -0.34
COL8A1P27658 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
COL8A1P27658 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
COL8A1P27658 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC12.93□□□□□ -0.34
COL8A1P27658 KRT18P9-201ENST00000604826 1300 ntBASIC12.93□□□□□ -0.34
COL8A1P27658 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC12.93□□□□□ -0.34
COL8A1P27658 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC12.93□□□□□ -0.34
COL8A1P27658 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 COX20P1-201ENST00000366529 357 ntBASIC12.93□□□□□ -0.34
COL8A1P27658 MIR557-201ENST00000385239 98 ntBASIC12.93□□□□□ -0.34
COL8A1P27658 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC12.93□□□□□ -0.34
COL8A1P27658 AL354861.1-201ENST00000445213 355 ntBASIC12.93□□□□□ -0.34
COL8A1P27658 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC12.93□□□□□ -0.34
COL8A1P27658 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC12.93□□□□□ -0.34
COL8A1P27658 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC12.93□□□□□ -0.34
COL8A1P27658 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
COL8A1P27658 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC12.93□□□□□ -0.34
COL8A1P27658 HMGB1P24-201ENST00000611897 328 ntBASIC12.93□□□□□ -0.34
COL8A1P27658 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC12.93□□□□□ -0.34
COL8A1P27658 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC12.93□□□□□ -0.34
COL8A1P27658 DDX5-235ENST00000630471 473 ntTSL 4 BASIC12.93□□□□□ -0.34
COL8A1P27658 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC12.93□□□□□ -0.34
COL8A1P27658 Z98259.2-201ENST00000641583 609 ntBASIC12.93□□□□□ -0.34
COL8A1P27658 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
COL8A1P27658 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
COL8A1P27658 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
COL8A1P27658 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
COL8A1P27658 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL8A1P27658 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC12.93□□□□□ -0.34
COL8A1P27658 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms