Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm7902-201ENSMUST00000198842 947 ntBASIC11.14□□□□□ -0.63
Cdx2P43241 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC11.14□□□□□ -0.63
Cdx2P43241 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx2P43241 Gm45592-201ENSMUST00000209605 1043 ntBASIC11.14□□□□□ -0.63
Cdx2P43241 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC11.14□□□□□ -0.63
Cdx2P43241 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx2P43241 Myf6-201ENSMUST00000044210 1263 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx2P43241 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
Cdx2P43241 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx2P43241 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Cdx2P43241 AC093022.4-203ENSMUST00000228523 2657 ntBASIC11.14□□□□□ -0.63
Cdx2P43241 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx2P43241 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx2P43241 Gm37600-201ENSMUST00000193764 3292 ntBASIC11.14□□□□□ -0.63
Cdx2P43241 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
Cdx2P43241 Gm7002-201ENSMUST00000221386 2165 ntBASIC11.14□□□□□ -0.63
Cdx2P43241 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx2P43241 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Cdx2P43241 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC11.14□□□□□ -0.63
Cdx2P43241 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx2P43241 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdx2P43241 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC11.13□□□□□ -0.63
Cdx2P43241 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC11.13□□□□□ -0.63
Cdx2P43241 Gm8899-201ENSMUST00000214635 1332 ntBASIC11.13□□□□□ -0.63
Cdx2P43241 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Cdx2P43241 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Cdx2P43241 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC11.13□□□□□ -0.63
Cdx2P43241 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Cdx2P43241 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Gm18294-201ENSMUST00000176980 1748 ntBASIC11.13□□□□□ -0.63
Cdx2P43241 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC11.13□□□□□ -0.63
Cdx2P43241 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Gm44056-201ENSMUST00000204623 1427 ntBASIC11.13□□□□□ -0.63
Cdx2P43241 Cdc42se1-203ENSMUST00000107200 637 ntTSL 3 BASIC11.13□□□□□ -0.63
Cdx2P43241 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
Cdx2P43241 Gm15172-201ENSMUST00000118945 1046 ntBASIC11.13□□□□□ -0.63
Cdx2P43241 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC11.13□□□□□ -0.63
Cdx2P43241 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC11.13□□□□□ -0.63
Cdx2P43241 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Ighv1-76-201ENSMUST00000169155 294 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Cdx2P43241 Ighv1-62-1-202ENSMUST00000171270 90 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Cdx2P43241 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC11.13□□□□□ -0.63
Cdx2P43241 Gm10100-201ENSMUST00000179726 363 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Cdx2P43241 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC11.13□□□□□ -0.63
Cdx2P43241 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC11.13□□□□□ -0.63
Cdx2P43241 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC11.13□□□□□ -0.63
Cdx2P43241 Gm7082-201ENSMUST00000209880 969 ntBASIC11.13□□□□□ -0.63
Cdx2P43241 Gm39288-201ENSMUST00000210554 446 ntBASIC11.13□□□□□ -0.63
Cdx2P43241 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC11.13□□□□□ -0.63
Cdx2P43241 CT009527.1-201ENSMUST00000224205 339 ntBASIC11.13□□□□□ -0.63
Cdx2P43241 AC154361.2-201ENSMUST00000224747 943 ntBASIC11.13□□□□□ -0.63
Cdx2P43241 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC11.13□□□□□ -0.63
Cdx2P43241 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdx2P43241 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Cdx2P43241 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdx2P43241 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC11.12□□□□□ -0.63
Cdx2P43241 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdx2P43241 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Cdx2P43241 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC11.12□□□□□ -0.63
Cdx2P43241 AC164702.1-201ENSMUST00000220135 2212 ntBASIC11.12□□□□□ -0.63
Cdx2P43241 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdx2P43241 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdx2P43241 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdx2P43241 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Cdx2P43241 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Cdx2P43241 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdx2P43241 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC11.12□□□□□ -0.63
Cdx2P43241 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC11.12□□□□□ -0.63
Cdx2P43241 Tcf7l2-204ENSMUST00000111649 982 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Cdx2P43241 Gm11560-201ENSMUST00000117567 948 ntBASIC11.12□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 70.2 ms