Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HMGB1P09429 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
HMGB1P09429 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 MPV17-205ENST00000402310 906 ntTSL 5 BASIC17.54■□□□□ 0.4
HMGB1P09429 ARSEP1-201ENST00000420443 635 ntBASIC17.54■□□□□ 0.4
HMGB1P09429 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.54■□□□□ 0.4
HMGB1P09429 FAM197Y7-201ENST00000432892 766 ntBASIC17.54■□□□□ 0.4
HMGB1P09429 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.54■□□□□ 0.4
HMGB1P09429 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 KRT90P-201ENST00000549264 1064 ntBASIC17.54■□□□□ 0.4
HMGB1P09429 AC005225.4-201ENST00000557330 545 ntBASIC17.54■□□□□ 0.4
HMGB1P09429 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.54■□□□□ 0.4
HMGB1P09429 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HMGB1P09429 AC015656.1-201ENST00000624209 3578 ntBASIC17.54■□□□□ 0.4
HMGB1P09429 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC17.54■□□□□ 0.4
HMGB1P09429 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC17.54■□□□□ 0.4
HMGB1P09429 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
HMGB1P09429 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
HMGB1P09429 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HMGB1P09429 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
HMGB1P09429 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HMGB1P09429 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC17.53■□□□□ 0.4
HMGB1P09429 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
HMGB1P09429 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 AC006001.1-201ENST00000325130 474 ntBASIC17.53■□□□□ 0.4
HMGB1P09429 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.53■□□□□ 0.4
HMGB1P09429 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.53■□□□□ 0.4
HMGB1P09429 AL035633.1-201ENST00000406139 838 ntBASIC17.53■□□□□ 0.4
HMGB1P09429 AC004945.1-201ENST00000416738 983 ntBASIC17.53■□□□□ 0.4
HMGB1P09429 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.53■□□□□ 0.4
HMGB1P09429 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.53■□□□□ 0.4
HMGB1P09429 AL590640.2-201ENST00000457038 527 ntBASIC17.53■□□□□ 0.4
HMGB1P09429 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
HMGB1P09429 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC17.53■□□□□ 0.4
HMGB1P09429 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC17.53■□□□□ 0.4
HMGB1P09429 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 RPL8-205ENST00000527914 551 ntTSL 3 BASIC17.53■□□□□ 0.4
HMGB1P09429 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.53■□□□□ 0.4
HMGB1P09429 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC17.53■□□□□ 0.4
HMGB1P09429 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
HMGB1P09429 OR10B1P-201ENST00000601666 907 ntBASIC17.53■□□□□ 0.4
HMGB1P09429 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.53■□□□□ 0.4
HMGB1P09429 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.53■□□□□ 0.4
HMGB1P09429 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC17.53■□□□□ 0.4
HMGB1P09429 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC17.53■□□□□ 0.4
HMGB1P09429 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC17.53■□□□□ 0.4
HMGB1P09429 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 AL590440.2-201ENST00000641973 1595 ntBASIC17.53■□□□□ 0.4
HMGB1P09429 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB1P09429 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB1P09429 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB1P09429 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
HMGB1P09429 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB1P09429 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
HMGB1P09429 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB1P09429 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGB1P09429 AC090505.1-201ENST00000430515 1834 ntBASIC17.52■□□□□ 0.4
HMGB1P09429 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGB1P09429 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
HMGB1P09429 F10-203ENST00000409306 1450 ntTSL 3 BASIC17.52■□□□□ 0.4
HMGB1P09429 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB1P09429 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB1P09429 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB1P09429 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGB1P09429 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB1P09429 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGB1P09429 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB1P09429 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC17.52■□□□□ 0.4
HMGB1P09429 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
HMGB1P09429 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB1P09429 USP31-203ENST00000567975 2142 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGB1P09429 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC17.52■□□□□ 0.4
HMGB1P09429 AC244669.2-201ENST00000612320 853 ntBASIC17.52■□□□□ 0.4
HMGB1P09429 AC138951.2-201ENST00000623455 1161 ntBASIC17.52■□□□□ 0.4
HMGB1P09429 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.52■□□□□ 0.4
HMGB1P09429 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB1P09429 AC139749.1-202ENST00000617529 3139 ntBASIC17.52■□□□□ 0.4
HMGB1P09429 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB1P09429 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 146 ms