Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC22.12■■□□□ 1.13
CUEDC1Q9NWM3 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CUEDC1Q9NWM3 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CUEDC1Q9NWM3 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CUEDC1Q9NWM3 AC004448.1-201ENST00000458332 883 ntBASIC22.11■■□□□ 1.13
CUEDC1Q9NWM3 AC092028.1-203ENST00000608262 953 ntBASIC22.11■■□□□ 1.13
CUEDC1Q9NWM3 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CUEDC1Q9NWM3 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CUEDC1Q9NWM3 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CUEDC1Q9NWM3 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CUEDC1Q9NWM3 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
CUEDC1Q9NWM3 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CUEDC1Q9NWM3 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CUEDC1Q9NWM3 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CUEDC1Q9NWM3 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC22.1■■□□□ 1.13
CUEDC1Q9NWM3 CLTA-210ENST00000540080 989 ntTSL 2 BASIC22.1■■□□□ 1.13
CUEDC1Q9NWM3 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.1■■□□□ 1.13
CUEDC1Q9NWM3 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
CUEDC1Q9NWM3 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CUEDC1Q9NWM3 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
CUEDC1Q9NWM3 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CUEDC1Q9NWM3 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CUEDC1Q9NWM3 AL161729.1-201ENST00000604104 1402 ntBASIC22.09■■□□□ 1.13
CUEDC1Q9NWM3 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
CUEDC1Q9NWM3 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
CUEDC1Q9NWM3 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CUEDC1Q9NWM3 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC22.09■■□□□ 1.13
CUEDC1Q9NWM3 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CUEDC1Q9NWM3 CREM-229ENST00000474362 1030 ntTSL 2 BASIC22.09■■□□□ 1.13
CUEDC1Q9NWM3 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
CUEDC1Q9NWM3 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CUEDC1Q9NWM3 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CUEDC1Q9NWM3 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.09■■□□□ 1.13
CUEDC1Q9NWM3 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC22.09■■□□□ 1.13
CUEDC1Q9NWM3 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CUEDC1Q9NWM3 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CUEDC1Q9NWM3 ABCB10P4-201ENST00000566803 2184 ntBASIC22.08■■□□□ 1.13
CUEDC1Q9NWM3 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.13
CUEDC1Q9NWM3 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC22.08■■□□□ 1.13
CUEDC1Q9NWM3 TSPY9P-201ENST00000440215 945 ntBASIC22.08■■□□□ 1.13
CUEDC1Q9NWM3 TSPY11P-201ENST00000442607 1045 ntBASIC22.08■■□□□ 1.13
CUEDC1Q9NWM3 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC22.08■■□□□ 1.13
CUEDC1Q9NWM3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
CUEDC1Q9NWM3 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.08■■□□□ 1.13
CUEDC1Q9NWM3 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
CUEDC1Q9NWM3 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC22.08■■□□□ 1.12
CUEDC1Q9NWM3 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.08■■□□□ 1.12
CUEDC1Q9NWM3 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
CUEDC1Q9NWM3 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CUEDC1Q9NWM3 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CUEDC1Q9NWM3 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC22.07■■□□□ 1.12
CUEDC1Q9NWM3 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC22.07■■□□□ 1.12
CUEDC1Q9NWM3 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CUEDC1Q9NWM3 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
CUEDC1Q9NWM3 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CUEDC1Q9NWM3 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
CUEDC1Q9NWM3 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC22.06■■□□□ 1.12
CUEDC1Q9NWM3 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CUEDC1Q9NWM3 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CUEDC1Q9NWM3 PEMT-206ENST00000435340 960 ntTSL 5 BASIC22.06■■□□□ 1.12
CUEDC1Q9NWM3 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.06■■□□□ 1.12
CUEDC1Q9NWM3 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
CUEDC1Q9NWM3 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC22.06■■□□□ 1.12
CUEDC1Q9NWM3 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CUEDC1Q9NWM3 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CUEDC1Q9NWM3 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC22.05■■□□□ 1.12
CUEDC1Q9NWM3 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC22.05■■□□□ 1.12
CUEDC1Q9NWM3 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
CUEDC1Q9NWM3 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
CUEDC1Q9NWM3 UNC93B8-201ENST00000511903 705 ntBASIC22.05■■□□□ 1.12
CUEDC1Q9NWM3 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC22.05■■□□□ 1.12
CUEDC1Q9NWM3 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CUEDC1Q9NWM3 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC22.04■■□□□ 1.12
CUEDC1Q9NWM3 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
CUEDC1Q9NWM3 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CUEDC1Q9NWM3 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CUEDC1Q9NWM3 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CUEDC1Q9NWM3 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CUEDC1Q9NWM3 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC22.04■■□□□ 1.12
CUEDC1Q9NWM3 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC22.04■■□□□ 1.12
CUEDC1Q9NWM3 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC22.04■■□□□ 1.12
CUEDC1Q9NWM3 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC22.04■■□□□ 1.12
CUEDC1Q9NWM3 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CUEDC1Q9NWM3 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
CUEDC1Q9NWM3 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
CUEDC1Q9NWM3 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CUEDC1Q9NWM3 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
CUEDC1Q9NWM3 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
CUEDC1Q9NWM3 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CUEDC1Q9NWM3 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC22.03■■□□□ 1.12
CUEDC1Q9NWM3 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CUEDC1Q9NWM3 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CUEDC1Q9NWM3 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
CUEDC1Q9NWM3 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
CUEDC1Q9NWM3 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
CUEDC1Q9NWM3 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
CUEDC1Q9NWM3 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CUEDC1Q9NWM3 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CUEDC1Q9NWM3 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.02■■□□□ 1.12
CUEDC1Q9NWM3 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.02■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms