Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Col6a3E9PWQ3 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col6a3E9PWQ3 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Col6a3E9PWQ3 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col6a3E9PWQ3 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col6a3E9PWQ3 Smad6-203ENSMUST00000179458 273 ntBASIC21.21■□□□□ 0.99
Col6a3E9PWQ3 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Col6a3E9PWQ3 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col6a3E9PWQ3 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col6a3E9PWQ3 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col6a3E9PWQ3 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Col6a3E9PWQ3 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
Col6a3E9PWQ3 Gm37856-201ENSMUST00000191634 999 ntBASIC21.2■□□□□ 0.98
Col6a3E9PWQ3 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.2■□□□□ 0.98
Col6a3E9PWQ3 Gm20049-201ENSMUST00000219950 730 ntBASIC21.2■□□□□ 0.98
Col6a3E9PWQ3 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col6a3E9PWQ3 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col6a3E9PWQ3 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col6a3E9PWQ3 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Col6a3E9PWQ3 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col6a3E9PWQ3 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC21.19■□□□□ 0.98
Col6a3E9PWQ3 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC21.19■□□□□ 0.98
Col6a3E9PWQ3 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC21.19■□□□□ 0.98
Col6a3E9PWQ3 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC21.18■□□□□ 0.98
Col6a3E9PWQ3 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col6a3E9PWQ3 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col6a3E9PWQ3 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col6a3E9PWQ3 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Col6a3E9PWQ3 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Col6a3E9PWQ3 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Col6a3E9PWQ3 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col6a3E9PWQ3 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col6a3E9PWQ3 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC21.17■□□□□ 0.98
Col6a3E9PWQ3 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col6a3E9PWQ3 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col6a3E9PWQ3 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col6a3E9PWQ3 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
Col6a3E9PWQ3 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col6a3E9PWQ3 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col6a3E9PWQ3 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC21.16■□□□□ 0.98
Col6a3E9PWQ3 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col6a3E9PWQ3 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC21.16■□□□□ 0.98
Col6a3E9PWQ3 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col6a3E9PWQ3 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC21.15■□□□□ 0.98
Col6a3E9PWQ3 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC21.15■□□□□ 0.98
Col6a3E9PWQ3 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col6a3E9PWQ3 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col6a3E9PWQ3 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
Col6a3E9PWQ3 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC21.14■□□□□ 0.97
Col6a3E9PWQ3 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col6a3E9PWQ3 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC21.14■□□□□ 0.97
Col6a3E9PWQ3 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col6a3E9PWQ3 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col6a3E9PWQ3 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col6a3E9PWQ3 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col6a3E9PWQ3 Gm3807-201ENSMUST00000193520 1168 ntBASIC21.13■□□□□ 0.97
Col6a3E9PWQ3 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col6a3E9PWQ3 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col6a3E9PWQ3 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col6a3E9PWQ3 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Col6a3E9PWQ3 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col6a3E9PWQ3 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col6a3E9PWQ3 AC153504.1-201ENSMUST00000218379 2290 ntBASIC21.12■□□□□ 0.97
Col6a3E9PWQ3 Gm44878-201ENSMUST00000205812 1295 ntBASIC21.12■□□□□ 0.97
Col6a3E9PWQ3 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC21.12■□□□□ 0.97
Col6a3E9PWQ3 Krtap5-1-202ENSMUST00000188274 742 ntBASIC21.12■□□□□ 0.97
Col6a3E9PWQ3 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col6a3E9PWQ3 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col6a3E9PWQ3 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col6a3E9PWQ3 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col6a3E9PWQ3 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col6a3E9PWQ3 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC21.11■□□□□ 0.97
Col6a3E9PWQ3 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col6a3E9PWQ3 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col6a3E9PWQ3 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC21.1■□□□□ 0.97
Col6a3E9PWQ3 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col6a3E9PWQ3 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col6a3E9PWQ3 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Col6a3E9PWQ3 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC21.09■□□□□ 0.97
Col6a3E9PWQ3 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col6a3E9PWQ3 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col6a3E9PWQ3 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
Col6a3E9PWQ3 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col6a3E9PWQ3 Gm21362-201ENSMUST00000194272 928 ntBASIC21.09■□□□□ 0.97
Col6a3E9PWQ3 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col6a3E9PWQ3 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC21.08■□□□□ 0.97
Col6a3E9PWQ3 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col6a3E9PWQ3 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Col6a3E9PWQ3 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC21.08■□□□□ 0.96
Col6a3E9PWQ3 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC21.08■□□□□ 0.96
Col6a3E9PWQ3 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col6a3E9PWQ3 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col6a3E9PWQ3 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Col6a3E9PWQ3 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Col6a3E9PWQ3 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col6a3E9PWQ3 Kdm3b-204ENSMUST00000224715 2032 ntBASIC21.07■□□□□ 0.96
Col6a3E9PWQ3 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col6a3E9PWQ3 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col6a3E9PWQ3 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col6a3E9PWQ3 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC21.07■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms