Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
TTC28Q96AY4 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.69□□□□□ -0.06
TTC28Q96AY4 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
TTC28Q96AY4 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC14.69□□□□□ -0.06
TTC28Q96AY4 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.69□□□□□ -0.06
TTC28Q96AY4 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 RN7SKP212-201ENST00000410851 328 ntBASIC14.69□□□□□ -0.06
TTC28Q96AY4 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 AP000533.1-201ENST00000456143 1177 ntBASIC14.69□□□□□ -0.06
TTC28Q96AY4 RN7SL788P-201ENST00000460504 316 ntBASIC14.69□□□□□ -0.06
TTC28Q96AY4 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC14.69□□□□□ -0.06
TTC28Q96AY4 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
TTC28Q96AY4 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
TTC28Q96AY4 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC14.69□□□□□ -0.06
TTC28Q96AY4 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
TTC28Q96AY4 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
TTC28Q96AY4 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 AC067931.2-201ENST00000623655 2003 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 TNRC18P3-201ENST00000441896 2691 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 AP001094.4-201ENST00000579008 2176 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 OR7E115P-201ENST00000382617 1024 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 CRIP1P2-201ENST00000425396 228 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 HNRNPA3P6-201ENST00000472163 1006 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 MARK2P17-201ENST00000498560 841 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 OR52V1P-201ENST00000515557 898 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 HNRNPA1P72-201ENST00000529511 967 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 AC114296.1-202ENST00000638019 771 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 REXO1L4P-201ENST00000605109 1937 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 AC069061.4-201ENST00000581294 1347 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 FTH1P18-201ENST00000412071 549 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 AL139317.2-201ENST00000556998 158 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 FAM223B-202ENST00000598177 713 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 AL136982.5-201ENST00000605222 294 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 FAM223A-202ENST00000625204 713 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 AL662844.4-201ENST00000606367 2838 ntBASIC14.68□□□□□ -0.06
TTC28Q96AY4 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TTC28Q96AY4 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC14.68□□□□□ -0.06
TTC28Q96AY4 PRAL-201ENST00000624952 3286 ntBASIC14.67□□□□□ -0.06
TTC28Q96AY4 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TTC28Q96AY4 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TTC28Q96AY4 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 LINC00265-2P-201ENST00000413372 782 ntBASIC14.67□□□□□ -0.06
TTC28Q96AY4 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 OR4C14P-201ENST00000440929 923 ntBASIC14.67□□□□□ -0.06
TTC28Q96AY4 OR52X1P-201ENST00000446117 914 ntBASIC14.67□□□□□ -0.06
TTC28Q96AY4 AL157871.2-201ENST00000556212 552 ntTSL 3 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 AC005777.1-201ENST00000588332 187 ntBASIC14.67□□□□□ -0.06
TTC28Q96AY4 AC134878.2-201ENST00000620700 1265 ntBASIC14.67□□□□□ -0.06
TTC28Q96AY4 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TTC28Q96AY4 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms