Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 1700026D11Rik-205ENSMUST00000151417 789 ntTSL 3 BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Rwdd2a-203ENSMUST00000185566 1054 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Gm46376-201ENSMUST00000222653 654 ntTSL 3 BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Cypt2-201ENSMUST00000041758 697 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Gm5148-201ENSMUST00000079755 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Gm25514-201ENSMUST00000083860 135 ntBASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Gm5822-201ENSMUST00000161562 1378 ntBASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Fcrl1-206ENSMUST00000194786 1540 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Gm10537-201ENSMUST00000192625 1698 ntBASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Ass1-201ENSMUST00000102840 1696 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Nprl3-202ENSMUST00000109389 1642 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Gm15570-201ENSMUST00000122093 625 ntBASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Gm28424-201ENSMUST00000187393 1319 ntBASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Ikzf2-204ENSMUST00000188110 1365 ntTSL 5 BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Ikzf2-208ENSMUST00000190855 1359 ntTSL 5 BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Iyd-201ENSMUST00000019896 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Zfp787-203ENSMUST00000207331 376 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 AC154585.1-201ENSMUST00000218917 997 ntBASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Gemin8-203ENSMUST00000096252 1039 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn4aQ9ER60 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Serpinb6a-203ENSMUST00000076532 1504 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Gm8020-201ENSMUST00000170174 1406 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Gm5944-201ENSMUST00000118182 1001 ntBASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Gm5764-201ENSMUST00000118817 885 ntBASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Gm15793-201ENSMUST00000121857 495 ntBASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Gm17171-201ENSMUST00000168048 534 ntTSL 3 BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Gm8707-201ENSMUST00000183325 980 ntBASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Gm34397-201ENSMUST00000213192 708 ntTSL 3 BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Mybph-201ENSMUST00000038445 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Faf2-201ENSMUST00000026991 1748 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Tex45-201ENSMUST00000047265 1613 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Scn4aQ9ER60 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Mrgpra2a-201ENSMUST00000159004 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Anp32e-206ENSMUST00000169426 915 ntTSL 5 BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Mir8104-201ENSMUST00000185165 101 ntBASIC15.66■□□□□ 0.1
Scn4aQ9ER60 1700012J22Rik-201ENSMUST00000193492 830 ntBASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Myo1h-207ENSMUST00000196676 1256 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Gm45225-201ENSMUST00000206852 1139 ntBASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Prss23os-203ENSMUST00000208814 975 ntTSL 5 BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Prss23os-204ENSMUST00000209064 972 ntTSL 5 BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Bpifa5-201ENSMUST00000028986 1089 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Ceacam1-205ENSMUST00000206171 1722 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Slc25a14-208ENSMUST00000177710 1516 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Satb1-204ENSMUST00000133574 3461 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Gm13191-201ENSMUST00000136489 416 ntTSL 3 BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Zfp961-204ENSMUST00000136516 601 ntTSL 2 BASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Snord55-201ENSMUST00000174939 79 ntBASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 65 ms