Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Shox2P70390 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC11.65□□□□□ -0.54
Shox2P70390 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Shox2P70390 Prkd2-202ENSMUST00000168093 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Shox2P70390 Cinp-201ENSMUST00000043716 2029 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Shox2P70390 Gm26737-201ENSMUST00000181106 2151 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Shox2P70390 Rasgef1a-203ENSMUST00000203804 2183 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Shox2P70390 Plscr3-203ENSMUST00000108633 2785 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Shox2P70390 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Shox2P70390 Apobec3-205ENSMUST00000175752 1977 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Shox2P70390 Capn8-201ENSMUST00000048941 2406 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Shox2P70390 Emp1-201ENSMUST00000032330 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Shox2P70390 Lysmd4-202ENSMUST00000179106 3319 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.55
Shox2P70390 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Shox2P70390 Pik3cb-201ENSMUST00000035037 6478 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Shox2P70390 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Shox2P70390 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Ptprr-206ENSMUST00000148731 2511 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Shox2P70390 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Gm7841-201ENSMUST00000122108 1629 ntBASIC11.64□□□□□ -0.55
Shox2P70390 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Shox2P70390 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Pld5-203ENSMUST00000111167 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Slfn1-201ENSMUST00000037994 1864 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Prpf6-203ENSMUST00000136481 3048 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Shox2P70390 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Shox2P70390 Col20a1-202ENSMUST00000149179 3867 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Shox2P70390 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC11.64□□□□□ -0.55
Shox2P70390 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC11.64□□□□□ -0.55
Shox2P70390 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC11.64□□□□□ -0.55
Shox2P70390 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC11.64□□□□□ -0.55
Shox2P70390 Sphk2-202ENSMUST00000107737 3548 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Shox2P70390 AC167565.1-201ENSMUST00000226980 1833 ntBASIC11.64□□□□□ -0.55
Shox2P70390 Gm13920-201ENSMUST00000146134 1663 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Gm15883-201ENSMUST00000153562 1690 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC11.64□□□□□ -0.55
Shox2P70390 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Bzw1-201ENSMUST00000050552 3876 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Ddx52-201ENSMUST00000049257 3194 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Tmem231-201ENSMUST00000034429 2984 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Shox2P70390 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Shox2P70390 Fcamr-202ENSMUST00000112477 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Tcof1-204ENSMUST00000176630 4529 ntAPPRIS P3 TSL 5 BASIC11.63□□□□□ -0.55
Shox2P70390 Icam1-201ENSMUST00000086399 2535 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Il10ra-202ENSMUST00000176222 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Adar-204ENSMUST00000118341 2399 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Nlrp6-201ENSMUST00000106045 3823 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Shox2P70390 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Ccdc33-201ENSMUST00000042205 2632 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Shox2P70390 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Shox2P70390 Kcnk5-201ENSMUST00000024011 3392 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Qtrt2-201ENSMUST00000023387 2838 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Shox2P70390 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC11.63□□□□□ -0.55
Shox2P70390 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC11.63□□□□□ -0.55
Shox2P70390 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC11.63□□□□□ -0.55
Shox2P70390 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC11.63□□□□□ -0.55
Shox2P70390 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC11.63□□□□□ -0.55
Shox2P70390 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Exosc10-202ENSMUST00000076022 2682 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Fam47e-202ENSMUST00000131166 1500 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Chdh-202ENSMUST00000118917 3406 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Stk38-201ENSMUST00000009138 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Mobp-202ENSMUST00000093773 3286 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Shox2P70390 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Shox2P70390 Gm43064-201ENSMUST00000199710 3144 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
Shox2P70390 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC11.63□□□□□ -0.55
Shox2P70390 Ppat-202ENSMUST00000140076 3981 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Gm12296-201ENSMUST00000144922 3220 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Mtmr7-205ENSMUST00000174205 2679 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Shox2P70390 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Shox2P70390 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Shox2P70390 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Shox2P70390 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms