Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Ppp4r1-201ENSMUST00000073104 3850 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
Cops4O88544 Gm7642-201ENSMUST00000216345 1809 ntBASIC10.98□□□□□ -0.65
Cops4O88544 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Gm43622-201ENSMUST00000200140 2019 ntBASIC10.98□□□□□ -0.65
Cops4O88544 Dao-202ENSMUST00000112292 2057 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC10.98□□□□□ -0.65
Cops4O88544 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
Cops4O88544 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Gm9299-201ENSMUST00000206392 1140 ntBASIC10.98□□□□□ -0.65
Cops4O88544 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 AC022775.2-201ENSMUST00000227885 646 ntBASIC10.98□□□□□ -0.65
Cops4O88544 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Gm43773-201ENSMUST00000198548 2162 ntBASIC10.98□□□□□ -0.65
Cops4O88544 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Gm43447-201ENSMUST00000198471 1535 ntBASIC10.98□□□□□ -0.65
Cops4O88544 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
Cops4O88544 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
Cops4O88544 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
Cops4O88544 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
Cops4O88544 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Gm32036-201ENSMUST00000221484 2638 ntTSL 2 BASIC10.97□□□□□ -0.65
Cops4O88544 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Mmel1-202ENSMUST00000080559 2926 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
Cops4O88544 Gm38292-201ENSMUST00000192646 3045 ntBASIC10.97□□□□□ -0.65
Cops4O88544 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC10.97□□□□□ -0.65
Cops4O88544 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Cops4O88544 Gm24830-201ENSMUST00000102024 166 ntBASIC10.97□□□□□ -0.65
Cops4O88544 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC10.97□□□□□ -0.65
Cops4O88544 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Gm13315-201ENSMUST00000120376 991 ntBASIC10.97□□□□□ -0.65
Cops4O88544 Gm11424-201ENSMUST00000121929 829 ntBASIC10.97□□□□□ -0.65
Cops4O88544 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC10.97□□□□□ -0.65
Cops4O88544 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC10.97□□□□□ -0.65
Cops4O88544 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Gm27682-201ENSMUST00000183930 110 ntBASIC10.97□□□□□ -0.65
Cops4O88544 Gm5904-201ENSMUST00000210286 865 ntBASIC10.97□□□□□ -0.65
Cops4O88544 AC153929.1-201ENSMUST00000219009 303 ntBASIC10.97□□□□□ -0.65
Cops4O88544 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC10.97□□□□□ -0.65
Cops4O88544 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Gm26232-201ENSMUST00000083360 166 ntBASIC10.97□□□□□ -0.65
Cops4O88544 Rnu1b6-201ENSMUST00000083839 166 ntBASIC10.97□□□□□ -0.65
Cops4O88544 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Cops4O88544 Furin-201ENSMUST00000107362 4166 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Cops4O88544 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Nol6-201ENSMUST00000030138 4599 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 AC122197.2-201ENSMUST00000219196 1635 ntBASIC10.97□□□□□ -0.65
Cops4O88544 Asb7-202ENSMUST00000124899 4928 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Csnk1g1-202ENSMUST00000117849 5173 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
Cops4O88544 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Gm9466-201ENSMUST00000218144 2246 ntBASIC10.97□□□□□ -0.65
Cops4O88544 Klhl22-208ENSMUST00000165790 2616 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Cops4O88544 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
Cops4O88544 Wt1os-203ENSMUST00000172701 2960 ntTSL 2 BASIC10.97□□□□□ -0.65
Cops4O88544 Fli1-201ENSMUST00000016231 3318 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Cops4O88544 Cit-202ENSMUST00000102560 6213 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
Cops4O88544 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cops4O88544 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
Cops4O88544 Gm37422-201ENSMUST00000193794 4718 ntBASIC10.96□□□□□ -0.65
Cops4O88544 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC10.96□□□□□ -0.65
Cops4O88544 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cops4O88544 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cops4O88544 Hap1-202ENSMUST00000138603 3316 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
Cops4O88544 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.65
Cops4O88544 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cops4O88544 Tcp11l2-201ENSMUST00000020223 2725 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cops4O88544 Klhl29-202ENSMUST00000218384 2716 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Cops4O88544 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
Cops4O88544 Dnm3-202ENSMUST00000086074 7523 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms