Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm5637-201ENSMUST00000153890 1119 ntBASIC9.73□□□□□ -0.85
Sdc1P18828 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC9.73□□□□□ -0.85
Sdc1P18828 AW822252-206ENSMUST00000208904 237 ntBASIC9.73□□□□□ -0.85
Sdc1P18828 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Ndufaf2-202ENSMUST00000223734 556 ntBASIC9.73□□□□□ -0.85
Sdc1P18828 AC130671.1-201ENSMUST00000227384 1237 ntBASIC9.73□□□□□ -0.85
Sdc1P18828 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC9.73□□□□□ -0.85
Sdc1P18828 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC9.73□□□□□ -0.85
Sdc1P18828 Ckap2-201ENSMUST00000046916 2593 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Steap3-203ENSMUST00000112641 5158 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
Sdc1P18828 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Tsc22d4-202ENSMUST00000100539 3983 ntAPPRIS P2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Gm11033-203ENSMUST00000156185 2321 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Phactr1-213ENSMUST00000148891 5307 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Acsl6-208ENSMUST00000108899 1662 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Tgoln1-201ENSMUST00000070524 5013 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Rdh11-201ENSMUST00000085254 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Gatsl2-201ENSMUST00000016088 7367 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Gm45089-201ENSMUST00000208082 2040 ntBASIC9.73□□□□□ -0.85
Sdc1P18828 Kalrn-202ENSMUST00000089655 6506 ntTSL 5 BASIC9.73□□□□□ -0.85
Sdc1P18828 Chic1-201ENSMUST00000116547 7375 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Eps8l1-204ENSMUST00000163893 3868 ntAPPRIS P2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Capza1-201ENSMUST00000094028 3193 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Ppp6r3-203ENSMUST00000172362 4633 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Sdc1P18828 Rnf40-201ENSMUST00000033088 3906 ntTSL 5 BASIC9.73□□□□□ -0.85
Sdc1P18828 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC9.73□□□□□ -0.85
Sdc1P18828 Myh13-201ENSMUST00000081911 5817 ntAPPRIS P1 TSL 5 BASIC9.73□□□□□ -0.85
Sdc1P18828 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Spg20-203ENSMUST00000117341 2957 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 B3glct-201ENSMUST00000100404 4570 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Tie1-203ENSMUST00000184261 4234 ntTSL 2 BASIC9.72□□□□□ -0.85
Sdc1P18828 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Cpt1c-201ENSMUST00000063761 2793 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Arid2-201ENSMUST00000096250 8507 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
Sdc1P18828 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC9.72□□□□□ -0.85
Sdc1P18828 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC9.72□□□□□ -0.85
Sdc1P18828 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC9.72□□□□□ -0.85
Sdc1P18828 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC9.72□□□□□ -0.85
Sdc1P18828 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
Sdc1P18828 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
Sdc1P18828 Gm27618-201ENSMUST00000183671 60 ntBASIC9.72□□□□□ -0.85
Sdc1P18828 Gm37277-201ENSMUST00000194052 1111 ntBASIC9.72□□□□□ -0.85
Sdc1P18828 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Gm6007-201ENSMUST00000208170 823 ntBASIC9.72□□□□□ -0.85
Sdc1P18828 Gm6983-201ENSMUST00000214912 628 ntBASIC9.72□□□□□ -0.85
Sdc1P18828 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC9.72□□□□□ -0.85
Sdc1P18828 CT010486.3-201ENSMUST00000224555 811 ntBASIC9.72□□□□□ -0.85
Sdc1P18828 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Slc1a2-201ENSMUST00000005220 2127 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
Sdc1P18828 Mypn-201ENSMUST00000095580 5246 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Msh3-201ENSMUST00000022220 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 AC154767.3-201ENSMUST00000225150 1342 ntBASIC9.72□□□□□ -0.85
Sdc1P18828 Gm43242-201ENSMUST00000199507 1776 ntBASIC9.72□□□□□ -0.85
Sdc1P18828 Rhbdf2-202ENSMUST00000103029 3593 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC9.72□□□□□ -0.85
Sdc1P18828 Zfp354a-204ENSMUST00000109122 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Mrgpre-201ENSMUST00000054048 3761 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Sdc1P18828 Fastkd5-201ENSMUST00000110262 3015 ntAPPRIS P1 TSL 2 BASIC9.72□□□□□ -0.85
Sdc1P18828 Glb1l2-207ENSMUST00000162702 2555 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Adam8-202ENSMUST00000106069 3117 ntAPPRIS P3 TSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Adam8-201ENSMUST00000026546 3100 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Ebf2-203ENSMUST00000176161 5204 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Prorsd1-202ENSMUST00000133103 2126 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Madd-213ENSMUST00000111376 5927 ntAPPRIS ALT2 TSL 5 BASIC9.71□□□□□ -0.85
Sdc1P18828 Madd-206ENSMUST00000099725 5905 ntAPPRIS ALT2 TSL 5 BASIC9.71□□□□□ -0.85
Sdc1P18828 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Tsc2-201ENSMUST00000097373 6018 ntAPPRIS P2 TSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Invs-201ENSMUST00000030029 5633 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Tyw1-202ENSMUST00000044204 4698 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Pomt1-201ENSMUST00000036473 2918 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Oxct1-201ENSMUST00000110690 3527 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Gm45828-201ENSMUST00000206938 1836 ntBASIC9.71□□□□□ -0.85
Sdc1P18828 Nf1-202ENSMUST00000108251 9217 ntAPPRIS ALT2 TSL 5 BASIC9.71□□□□□ -0.85
Sdc1P18828 Sass6-204ENSMUST00000197335 2458 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Piezo2-202ENSMUST00000047480 10724 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Sdc1P18828 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC9.71□□□□□ -0.86
Sdc1P18828 Gm14701-201ENSMUST00000117156 348 ntBASIC9.71□□□□□ -0.86
Sdc1P18828 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
Sdc1P18828 Gm17208-201ENSMUST00000168388 535 ntBASIC9.71□□□□□ -0.86
Sdc1P18828 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.86
Sdc1P18828 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC9.71□□□□□ -0.86
Sdc1P18828 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC9.71□□□□□ -0.86
Sdc1P18828 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms