Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
IFT140Q96RY7 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC24.01■■□□□ 1.43
IFT140Q96RY7 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC24.01■■□□□ 1.43
IFT140Q96RY7 GOLGA6L16P-201ENST00000441780 1299 ntBASIC24.01■■□□□ 1.43
IFT140Q96RY7 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC24.01■■□□□ 1.43
IFT140Q96RY7 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC24.01■■□□□ 1.43
IFT140Q96RY7 AC145285.5-201ENST00000562217 361 ntBASIC24.01■■□□□ 1.43
IFT140Q96RY7 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC24.01■■□□□ 1.43
IFT140Q96RY7 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC24.01■■□□□ 1.43
IFT140Q96RY7 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC24.01■■□□□ 1.43
IFT140Q96RY7 AL359091.4-201ENST00000610052 409 ntBASIC24.01■■□□□ 1.43
IFT140Q96RY7 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC24.01■■□□□ 1.43
IFT140Q96RY7 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC24.01■■□□□ 1.43
IFT140Q96RY7 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC24.01■■□□□ 1.43
IFT140Q96RY7 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
IFT140Q96RY7 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC24.01■■□□□ 1.43
IFT140Q96RY7 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC24.01■■□□□ 1.43
IFT140Q96RY7 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC24.01■■□□□ 1.43
IFT140Q96RY7 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
IFT140Q96RY7 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
IFT140Q96RY7 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC24.01■■□□□ 1.43
IFT140Q96RY7 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
IFT140Q96RY7 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC24.01■■□□□ 1.43
IFT140Q96RY7 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
IFT140Q96RY7 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC24■■□□□ 1.43
IFT140Q96RY7 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC24■■□□□ 1.43
IFT140Q96RY7 OR7E115P-201ENST00000382617 1024 ntBASIC24■■□□□ 1.43
IFT140Q96RY7 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC24■■□□□ 1.43
IFT140Q96RY7 CDCA4P4-201ENST00000435216 680 ntBASIC24■■□□□ 1.43
IFT140Q96RY7 RN7SL846P-201ENST00000467429 292 ntBASIC24■■□□□ 1.43
IFT140Q96RY7 RN7SL375P-201ENST00000492442 298 ntBASIC24■■□□□ 1.43
IFT140Q96RY7 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC24■■□□□ 1.43
IFT140Q96RY7 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC24■■□□□ 1.43
IFT140Q96RY7 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC24■■□□□ 1.43
IFT140Q96RY7 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC24■■□□□ 1.43
IFT140Q96RY7 AC005274.1-201ENST00000623460 802 ntBASIC24■■□□□ 1.43
IFT140Q96RY7 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
IFT140Q96RY7 STRN-202ENST00000379213 2254 ntTSL 5 BASIC24■■□□□ 1.43
IFT140Q96RY7 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC24■■□□□ 1.43
IFT140Q96RY7 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC24■■□□□ 1.43
IFT140Q96RY7 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC24■■□□□ 1.43
IFT140Q96RY7 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC24■■□□□ 1.43
IFT140Q96RY7 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC24■■□□□ 1.43
IFT140Q96RY7 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC24■■□□□ 1.43
IFT140Q96RY7 AP000354.1-201ENST00000396982 456 ntBASIC24■■□□□ 1.43
IFT140Q96RY7 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC24■■□□□ 1.43
IFT140Q96RY7 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC24■■□□□ 1.43
IFT140Q96RY7 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC24■■□□□ 1.43
IFT140Q96RY7 AC140658.4-201ENST00000561990 352 ntBASIC24■■□□□ 1.43
IFT140Q96RY7 CES1P2-201ENST00000566467 1242 ntBASIC24■■□□□ 1.43
IFT140Q96RY7 HNRNPA1P16-201ENST00000575692 955 ntBASIC24■■□□□ 1.43
IFT140Q96RY7 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC24■■□□□ 1.43
IFT140Q96RY7 AL021707.6-201ENST00000609212 491 ntBASIC24■■□□□ 1.43
IFT140Q96RY7 GGNBP1-204ENST00000613113 887 ntBASIC24■■□□□ 1.43
IFT140Q96RY7 AC004466.2-201ENST00000614749 516 ntBASIC24■■□□□ 1.43
IFT140Q96RY7 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC24■■□□□ 1.43
IFT140Q96RY7 LINC01101-201ENST00000622953 1884 ntBASIC23.99■■□□□ 1.43
IFT140Q96RY7 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC23.99■■□□□ 1.43
IFT140Q96RY7 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
IFT140Q96RY7 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
IFT140Q96RY7 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC23.99■■□□□ 1.43
IFT140Q96RY7 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
IFT140Q96RY7 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
IFT140Q96RY7 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
IFT140Q96RY7 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
IFT140Q96RY7 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC23.99■■□□□ 1.43
IFT140Q96RY7 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
IFT140Q96RY7 RPL14-203ENST00000416518 812 ntTSL 3 BASIC23.99■■□□□ 1.43
IFT140Q96RY7 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC23.99■■□□□ 1.43
IFT140Q96RY7 GALP-202ENST00000440823 889 ntTSL 5 BASIC23.99■■□□□ 1.43
IFT140Q96RY7 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC23.99■■□□□ 1.43
IFT140Q96RY7 AL136982.5-201ENST00000605222 294 ntBASIC23.99■■□□□ 1.43
IFT140Q96RY7 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC23.99■■□□□ 1.43
IFT140Q96RY7 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
IFT140Q96RY7 AL365181.1-201ENST00000564032 1828 ntBASIC23.99■■□□□ 1.43
IFT140Q96RY7 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC23.99■■□□□ 1.43
IFT140Q96RY7 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
IFT140Q96RY7 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC23.99■■□□□ 1.43
IFT140Q96RY7 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
IFT140Q96RY7 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
IFT140Q96RY7 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
IFT140Q96RY7 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
IFT140Q96RY7 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
IFT140Q96RY7 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC23.98■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms