Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 CU062626.3-201ENSMUST00000225522 1411 ntBASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Mir6927-201ENSMUST00000184494 71 ntBASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Gm17827-201ENSMUST00000211825 742 ntBASIC12.31□□□□□ -0.44
Vps28Q9D1C8 AC107638.1-201ENSMUST00000213690 1061 ntBASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC12.31□□□□□ -0.44
Vps28Q9D1C8 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Gm15711-201ENSMUST00000118889 535 ntBASIC12.3□□□□□ -0.44
Vps28Q9D1C8 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Vps28Q9D1C8 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Gm43174-201ENSMUST00000195914 2445 ntBASIC12.29□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 71.2 ms