Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Msh4Q99MT2 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh4Q99MT2 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh4Q99MT2 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Msh4Q99MT2 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh4Q99MT2 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh4Q99MT2 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC20.05■□□□□ 0.8
Msh4Q99MT2 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh4Q99MT2 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh4Q99MT2 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh4Q99MT2 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Msh4Q99MT2 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh4Q99MT2 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.04■□□□□ 0.8
Msh4Q99MT2 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC20.04■□□□□ 0.8
Msh4Q99MT2 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Msh4Q99MT2 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
Msh4Q99MT2 Etf1-202ENSMUST00000180351 108 ntBASIC20.03■□□□□ 0.8
Msh4Q99MT2 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC20.03■□□□□ 0.8
Msh4Q99MT2 Gm5131-201ENSMUST00000212776 1238 ntBASIC20.03■□□□□ 0.8
Msh4Q99MT2 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC20.03■□□□□ 0.8
Msh4Q99MT2 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh4Q99MT2 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh4Q99MT2 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh4Q99MT2 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Msh4Q99MT2 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Msh4Q99MT2 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Msh4Q99MT2 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Msh4Q99MT2 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Msh4Q99MT2 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Msh4Q99MT2 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Msh4Q99MT2 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
Msh4Q99MT2 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Msh4Q99MT2 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Msh4Q99MT2 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC20.01■□□□□ 0.79
Msh4Q99MT2 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC20.01■□□□□ 0.79
Msh4Q99MT2 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Msh4Q99MT2 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.01■□□□□ 0.79
Msh4Q99MT2 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Msh4Q99MT2 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Msh4Q99MT2 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Msh4Q99MT2 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20■□□□□ 0.79
Msh4Q99MT2 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Msh4Q99MT2 Gm43006-201ENSMUST00000197702 1602 ntBASIC20■□□□□ 0.79
Msh4Q99MT2 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Msh4Q99MT2 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC20■□□□□ 0.79
Msh4Q99MT2 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Msh4Q99MT2 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Msh4Q99MT2 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
Msh4Q99MT2 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Msh4Q99MT2 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Msh4Q99MT2 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Msh4Q99MT2 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Msh4Q99MT2 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Msh4Q99MT2 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Msh4Q99MT2 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Msh4Q99MT2 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Msh4Q99MT2 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Msh4Q99MT2 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msh4Q99MT2 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Msh4Q99MT2 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC19.98■□□□□ 0.79
Msh4Q99MT2 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msh4Q99MT2 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC19.98■□□□□ 0.79
Msh4Q99MT2 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msh4Q99MT2 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh4Q99MT2 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh4Q99MT2 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh4Q99MT2 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh4Q99MT2 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Msh4Q99MT2 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Msh4Q99MT2 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh4Q99MT2 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msh4Q99MT2 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC19.96■□□□□ 0.79
Msh4Q99MT2 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msh4Q99MT2 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msh4Q99MT2 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC19.96■□□□□ 0.79
Msh4Q99MT2 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msh4Q99MT2 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msh4Q99MT2 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msh4Q99MT2 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msh4Q99MT2 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msh4Q99MT2 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Msh4Q99MT2 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC19.95■□□□□ 0.78
Msh4Q99MT2 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msh4Q99MT2 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msh4Q99MT2 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msh4Q99MT2 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msh4Q99MT2 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msh4Q99MT2 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msh4Q99MT2 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Msh4Q99MT2 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msh4Q99MT2 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msh4Q99MT2 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msh4Q99MT2 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC19.94■□□□□ 0.78
Msh4Q99MT2 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msh4Q99MT2 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC19.94■□□□□ 0.78
Msh4Q99MT2 Gm10399-202ENSMUST00000202768 748 ntBASIC19.94■□□□□ 0.78
Msh4Q99MT2 Gm40881-201ENSMUST00000223397 166 ntBASIC19.94■□□□□ 0.78
Msh4Q99MT2 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msh4Q99MT2 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msh4Q99MT2 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 66 ms