Protein–RNA interactions for Protein: Q8VDS4

Rprd1a, Regulation of nuclear pre-mRNA domain-containing protein 1A, mousemouse

Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rprd1aQ8VDS4 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rprd1aQ8VDS4 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC21.25■□□□□ 0.99
Rprd1aQ8VDS4 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC21.25■□□□□ 0.99
Rprd1aQ8VDS4 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rprd1aQ8VDS4 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Rprd1aQ8VDS4 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Rprd1aQ8VDS4 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Rprd1aQ8VDS4 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rprd1aQ8VDS4 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC21.24■□□□□ 0.99
Rprd1aQ8VDS4 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rprd1aQ8VDS4 Kdm3b-204ENSMUST00000224715 2032 ntBASIC21.24■□□□□ 0.99
Rprd1aQ8VDS4 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rprd1aQ8VDS4 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
Rprd1aQ8VDS4 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rprd1aQ8VDS4 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rprd1aQ8VDS4 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Rprd1aQ8VDS4 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Rprd1aQ8VDS4 Gm43403-201ENSMUST00000198011 1786 ntBASIC21.23■□□□□ 0.99
Rprd1aQ8VDS4 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Rprd1aQ8VDS4 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rprd1aQ8VDS4 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rprd1aQ8VDS4 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rprd1aQ8VDS4 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rprd1aQ8VDS4 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rprd1aQ8VDS4 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rprd1aQ8VDS4 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Rprd1aQ8VDS4 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rprd1aQ8VDS4 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rprd1aQ8VDS4 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Rprd1aQ8VDS4 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rprd1aQ8VDS4 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rprd1aQ8VDS4 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Rprd1aQ8VDS4 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rprd1aQ8VDS4 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Rprd1aQ8VDS4 AC124392.1-201ENSMUST00000225172 5324 ntBASIC21.2■□□□□ 0.98
Rprd1aQ8VDS4 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC21.2■□□□□ 0.98
Rprd1aQ8VDS4 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rprd1aQ8VDS4 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC21.19■□□□□ 0.98
Rprd1aQ8VDS4 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Rprd1aQ8VDS4 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rprd1aQ8VDS4 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC21.19■□□□□ 0.98
Rprd1aQ8VDS4 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Rprd1aQ8VDS4 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rprd1aQ8VDS4 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC21.18■□□□□ 0.98
Rprd1aQ8VDS4 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rprd1aQ8VDS4 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC21.18■□□□□ 0.98
Rprd1aQ8VDS4 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Rprd1aQ8VDS4 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Rprd1aQ8VDS4 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Rprd1aQ8VDS4 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rprd1aQ8VDS4 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Rprd1aQ8VDS4 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
Rprd1aQ8VDS4 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC21.17■□□□□ 0.98
Rprd1aQ8VDS4 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC21.17■□□□□ 0.98
Rprd1aQ8VDS4 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rprd1aQ8VDS4 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rprd1aQ8VDS4 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Rprd1aQ8VDS4 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rprd1aQ8VDS4 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rprd1aQ8VDS4 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rprd1aQ8VDS4 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rprd1aQ8VDS4 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC21.16■□□□□ 0.98
Rprd1aQ8VDS4 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
Rprd1aQ8VDS4 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Rprd1aQ8VDS4 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rprd1aQ8VDS4 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rprd1aQ8VDS4 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC21.15■□□□□ 0.98
Rprd1aQ8VDS4 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rprd1aQ8VDS4 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Rprd1aQ8VDS4 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Rprd1aQ8VDS4 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rprd1aQ8VDS4 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rprd1aQ8VDS4 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC21.14■□□□□ 0.98
Rprd1aQ8VDS4 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Rprd1aQ8VDS4 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Rprd1aQ8VDS4 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Rprd1aQ8VDS4 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC21.14■□□□□ 0.97
Rprd1aQ8VDS4 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Rprd1aQ8VDS4 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Rprd1aQ8VDS4 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Rprd1aQ8VDS4 Gm32051-202ENSMUST00000197905 2385 ntBASIC21.14■□□□□ 0.97
Rprd1aQ8VDS4 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Rprd1aQ8VDS4 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rprd1aQ8VDS4 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rprd1aQ8VDS4 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rprd1aQ8VDS4 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC21.13■□□□□ 0.97
Rprd1aQ8VDS4 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rprd1aQ8VDS4 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rprd1aQ8VDS4 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rprd1aQ8VDS4 Dmtn-209ENSMUST00000228295 2572 ntBASIC21.13■□□□□ 0.97
Rprd1aQ8VDS4 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rprd1aQ8VDS4 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rprd1aQ8VDS4 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Rprd1aQ8VDS4 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Rprd1aQ8VDS4 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Rprd1aQ8VDS4 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC21.12■□□□□ 0.97
Rprd1aQ8VDS4 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.12■□□□□ 0.97
Rprd1aQ8VDS4 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
Rprd1aQ8VDS4 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Rprd1aQ8VDS4 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 7.9 ms