Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC28.68■■■□□ 2.18
Usp40Q8BWR4 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC28.67■■■□□ 2.18
Usp40Q8BWR4 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Usp40Q8BWR4 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
Usp40Q8BWR4 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Usp40Q8BWR4 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
Usp40Q8BWR4 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Usp40Q8BWR4 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
Usp40Q8BWR4 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Usp40Q8BWR4 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Usp40Q8BWR4 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Usp40Q8BWR4 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC28.66■■■□□ 2.18
Usp40Q8BWR4 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Usp40Q8BWR4 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Usp40Q8BWR4 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
Usp40Q8BWR4 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
Usp40Q8BWR4 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
Usp40Q8BWR4 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Usp40Q8BWR4 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
Usp40Q8BWR4 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
Usp40Q8BWR4 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC28.65■■■□□ 2.18
Usp40Q8BWR4 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Usp40Q8BWR4 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC28.64■■■□□ 2.18
Usp40Q8BWR4 Mir7075-201ENSMUST00000184187 82 ntBASIC28.64■■■□□ 2.18
Usp40Q8BWR4 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Usp40Q8BWR4 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.17
Usp40Q8BWR4 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC28.64■■■□□ 2.17
Usp40Q8BWR4 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Usp40Q8BWR4 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Usp40Q8BWR4 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
Usp40Q8BWR4 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC28.63■■■□□ 2.17
Usp40Q8BWR4 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC28.63■■■□□ 2.17
Usp40Q8BWR4 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC28.62■■■□□ 2.17
Usp40Q8BWR4 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Usp40Q8BWR4 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
Usp40Q8BWR4 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
Usp40Q8BWR4 Gm2011-201ENSMUST00000203124 1263 ntBASIC28.62■■■□□ 2.17
Usp40Q8BWR4 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Usp40Q8BWR4 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Usp40Q8BWR4 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC28.61■■■□□ 2.17
Usp40Q8BWR4 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Usp40Q8BWR4 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC28.61■■■□□ 2.17
Usp40Q8BWR4 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC28.61■■■□□ 2.17
Usp40Q8BWR4 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Usp40Q8BWR4 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC28.6■■■□□ 2.17
Usp40Q8BWR4 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Usp40Q8BWR4 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
Usp40Q8BWR4 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC28.6■■■□□ 2.17
Usp40Q8BWR4 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC28.6■■■□□ 2.17
Usp40Q8BWR4 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Usp40Q8BWR4 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC28.59■■■□□ 2.17
Usp40Q8BWR4 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Usp40Q8BWR4 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC28.59■■■□□ 2.17
Usp40Q8BWR4 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Usp40Q8BWR4 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC28.59■■■□□ 2.17
Usp40Q8BWR4 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Usp40Q8BWR4 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Usp40Q8BWR4 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Usp40Q8BWR4 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Usp40Q8BWR4 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Usp40Q8BWR4 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
Usp40Q8BWR4 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Usp40Q8BWR4 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Usp40Q8BWR4 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
Usp40Q8BWR4 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Usp40Q8BWR4 Gm37415-201ENSMUST00000192265 2054 ntBASIC28.57■■■□□ 2.16
Usp40Q8BWR4 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Usp40Q8BWR4 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC28.56■■■□□ 2.16
Usp40Q8BWR4 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC28.56■■■□□ 2.16
Usp40Q8BWR4 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
Usp40Q8BWR4 Gm43530-201ENSMUST00000195920 274 ntBASIC28.56■■■□□ 2.16
Usp40Q8BWR4 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Usp40Q8BWR4 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC28.56■■■□□ 2.16
Usp40Q8BWR4 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Usp40Q8BWR4 AC166356.1-201ENSMUST00000228236 1426 ntBASIC28.55■■■□□ 2.16
Usp40Q8BWR4 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC28.55■■■□□ 2.16
Usp40Q8BWR4 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Usp40Q8BWR4 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC28.54■■■□□ 2.16
Usp40Q8BWR4 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC28.54■■■□□ 2.16
Usp40Q8BWR4 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC28.54■■■□□ 2.16
Usp40Q8BWR4 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
Usp40Q8BWR4 Gm43759-201ENSMUST00000196925 1261 ntBASIC28.54■■■□□ 2.16
Usp40Q8BWR4 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Usp40Q8BWR4 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
Usp40Q8BWR4 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Usp40Q8BWR4 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
Usp40Q8BWR4 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC28.52■■■□□ 2.16
Usp40Q8BWR4 Gm43017-201ENSMUST00000198296 752 ntBASIC28.52■■■□□ 2.16
Usp40Q8BWR4 Gm5576-201ENSMUST00000075809 1236 ntBASIC28.52■■■□□ 2.16
Usp40Q8BWR4 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC28.52■■■□□ 2.16
Usp40Q8BWR4 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
Usp40Q8BWR4 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
Usp40Q8BWR4 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
Usp40Q8BWR4 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Usp40Q8BWR4 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC28.51■■■□□ 2.15
Usp40Q8BWR4 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Usp40Q8BWR4 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Usp40Q8BWR4 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
Usp40Q8BWR4 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Usp40Q8BWR4 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms