Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Ddx58Q6Q899 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Ddx58Q6Q899 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC25.74■■□□□ 1.71
Ddx58Q6Q899 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
Ddx58Q6Q899 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Ddx58Q6Q899 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
Ddx58Q6Q899 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Ddx58Q6Q899 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Ddx58Q6Q899 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Ddx58Q6Q899 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Ddx58Q6Q899 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC25.73■■□□□ 1.71
Ddx58Q6Q899 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Ddx58Q6Q899 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC25.73■■□□□ 1.71
Ddx58Q6Q899 Gm43403-201ENSMUST00000198011 1786 ntBASIC25.72■■□□□ 1.71
Ddx58Q6Q899 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Ddx58Q6Q899 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Ddx58Q6Q899 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC25.72■■□□□ 1.71
Ddx58Q6Q899 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Ddx58Q6Q899 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Ddx58Q6Q899 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
Ddx58Q6Q899 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Ddx58Q6Q899 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Ddx58Q6Q899 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC25.71■■□□□ 1.71
Ddx58Q6Q899 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
Ddx58Q6Q899 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
Ddx58Q6Q899 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Ddx58Q6Q899 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
Ddx58Q6Q899 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC25.7■■□□□ 1.7
Ddx58Q6Q899 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
Ddx58Q6Q899 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Ddx58Q6Q899 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC25.7■■□□□ 1.7
Ddx58Q6Q899 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC25.7■■□□□ 1.7
Ddx58Q6Q899 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Ddx58Q6Q899 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Ddx58Q6Q899 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
Ddx58Q6Q899 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC25.69■■□□□ 1.7
Ddx58Q6Q899 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Ddx58Q6Q899 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Ddx58Q6Q899 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Ddx58Q6Q899 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC25.68■■□□□ 1.7
Ddx58Q6Q899 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Ddx58Q6Q899 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Ddx58Q6Q899 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Ddx58Q6Q899 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Ddx58Q6Q899 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC25.68■■□□□ 1.7
Ddx58Q6Q899 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
Ddx58Q6Q899 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Ddx58Q6Q899 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Ddx58Q6Q899 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Ddx58Q6Q899 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Ddx58Q6Q899 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC25.67■■□□□ 1.7
Ddx58Q6Q899 Gm8770-201ENSMUST00000121113 1109 ntBASIC25.67■■□□□ 1.7
Ddx58Q6Q899 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC25.67■■□□□ 1.7
Ddx58Q6Q899 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC25.67■■□□□ 1.7
Ddx58Q6Q899 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Ddx58Q6Q899 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Ddx58Q6Q899 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
Ddx58Q6Q899 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
Ddx58Q6Q899 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC25.66■■□□□ 1.7
Ddx58Q6Q899 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Ddx58Q6Q899 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Ddx58Q6Q899 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
Ddx58Q6Q899 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC25.65■■□□□ 1.7
Ddx58Q6Q899 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Ddx58Q6Q899 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Ddx58Q6Q899 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Ddx58Q6Q899 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC25.64■■□□□ 1.7
Ddx58Q6Q899 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Ddx58Q6Q899 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Ddx58Q6Q899 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.7
Ddx58Q6Q899 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Ddx58Q6Q899 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
Ddx58Q6Q899 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
Ddx58Q6Q899 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Ddx58Q6Q899 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Ddx58Q6Q899 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Ddx58Q6Q899 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC25.63■■□□□ 1.69
Ddx58Q6Q899 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Ddx58Q6Q899 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC25.62■■□□□ 1.69
Ddx58Q6Q899 Gm43530-201ENSMUST00000195920 274 ntBASIC25.62■■□□□ 1.69
Ddx58Q6Q899 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Ddx58Q6Q899 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC25.62■■□□□ 1.69
Ddx58Q6Q899 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Ddx58Q6Q899 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Ddx58Q6Q899 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Ddx58Q6Q899 Gm43759-201ENSMUST00000196925 1261 ntBASIC25.61■■□□□ 1.69
Ddx58Q6Q899 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC25.61■■□□□ 1.69
Ddx58Q6Q899 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Ddx58Q6Q899 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Ddx58Q6Q899 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Ddx58Q6Q899 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC25.6■■□□□ 1.69
Ddx58Q6Q899 Gm43137-201ENSMUST00000198052 594 ntBASIC25.6■■□□□ 1.69
Ddx58Q6Q899 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Ddx58Q6Q899 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Ddx58Q6Q899 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
Ddx58Q6Q899 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
Ddx58Q6Q899 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Ddx58Q6Q899 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC25.59■■□□□ 1.69
Ddx58Q6Q899 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
Ddx58Q6Q899 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC25.59■■□□□ 1.69
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms