Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ShhQ62226 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ShhQ62226 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
ShhQ62226 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ShhQ62226 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ShhQ62226 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
ShhQ62226 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.15■□□□□ 0.66
ShhQ62226 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
ShhQ62226 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC19.15■□□□□ 0.66
ShhQ62226 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC19.14■□□□□ 0.66
ShhQ62226 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
ShhQ62226 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.14■□□□□ 0.65
ShhQ62226 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC19.14■□□□□ 0.65
ShhQ62226 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
ShhQ62226 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ShhQ62226 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC19.14■□□□□ 0.65
ShhQ62226 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
ShhQ62226 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ShhQ62226 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ShhQ62226 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ShhQ62226 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ShhQ62226 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC19.13■□□□□ 0.65
ShhQ62226 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
ShhQ62226 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ShhQ62226 Gm6277-202ENSMUST00000224036 2779 ntBASIC19.12■□□□□ 0.65
ShhQ62226 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ShhQ62226 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ShhQ62226 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ShhQ62226 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ShhQ62226 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ShhQ62226 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
ShhQ62226 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
ShhQ62226 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ShhQ62226 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ShhQ62226 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ShhQ62226 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ShhQ62226 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ShhQ62226 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC19.11■□□□□ 0.65
ShhQ62226 Gm10399-202ENSMUST00000202768 748 ntBASIC19.11■□□□□ 0.65
ShhQ62226 Gm37415-201ENSMUST00000192265 2054 ntBASIC19.11■□□□□ 0.65
ShhQ62226 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ShhQ62226 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
ShhQ62226 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ShhQ62226 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
ShhQ62226 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
ShhQ62226 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.1■□□□□ 0.65
ShhQ62226 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.1■□□□□ 0.65
ShhQ62226 Golgb1-201ENSMUST00000023534 498 ntBASIC19.1■□□□□ 0.65
ShhQ62226 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
ShhQ62226 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 AC158990.1-201ENSMUST00000221450 2016 ntBASIC19.1■□□□□ 0.65
ShhQ62226 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19.1■□□□□ 0.65
ShhQ62226 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ShhQ62226 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ShhQ62226 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
ShhQ62226 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
ShhQ62226 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC19.09■□□□□ 0.65
ShhQ62226 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
ShhQ62226 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ShhQ62226 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ShhQ62226 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
ShhQ62226 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ShhQ62226 Gm42418-201ENSMUST00000182010 1831 ntBASIC19.09■□□□□ 0.65
ShhQ62226 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
ShhQ62226 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC19.08■□□□□ 0.64
ShhQ62226 Gm29257-201ENSMUST00000186115 639 ntBASIC19.08■□□□□ 0.64
ShhQ62226 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
ShhQ62226 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
ShhQ62226 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
ShhQ62226 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.64
ShhQ62226 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
ShhQ62226 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ShhQ62226 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
ShhQ62226 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ShhQ62226 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ShhQ62226 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC19.07■□□□□ 0.64
ShhQ62226 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC19.07■□□□□ 0.64
ShhQ62226 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.07■□□□□ 0.64
ShhQ62226 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
ShhQ62226 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ShhQ62226 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms