Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ShhQ62226 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ShhQ62226 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
ShhQ62226 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ShhQ62226 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ShhQ62226 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
ShhQ62226 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.15■□□□□ 0.66
ShhQ62226 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
ShhQ62226 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC19.15■□□□□ 0.66
ShhQ62226 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ShhQ62226 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC19.14■□□□□ 0.66
ShhQ62226 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
ShhQ62226 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.14■□□□□ 0.65
ShhQ62226 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC19.14■□□□□ 0.65
ShhQ62226 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
ShhQ62226 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ShhQ62226 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC19.14■□□□□ 0.65
ShhQ62226 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
ShhQ62226 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ShhQ62226 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ShhQ62226 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ShhQ62226 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ShhQ62226 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC19.13■□□□□ 0.65
ShhQ62226 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
ShhQ62226 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ShhQ62226 Gm6277-202ENSMUST00000224036 2779 ntBASIC19.12■□□□□ 0.65
ShhQ62226 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ShhQ62226 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ShhQ62226 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ShhQ62226 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ShhQ62226 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ShhQ62226 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
ShhQ62226 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
ShhQ62226 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ShhQ62226 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ShhQ62226 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ShhQ62226 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ShhQ62226 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ShhQ62226 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC19.11■□□□□ 0.65
ShhQ62226 Gm10399-202ENSMUST00000202768 748 ntBASIC19.11■□□□□ 0.65
ShhQ62226 Gm37415-201ENSMUST00000192265 2054 ntBASIC19.11■□□□□ 0.65
ShhQ62226 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ShhQ62226 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
ShhQ62226 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ShhQ62226 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
ShhQ62226 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
ShhQ62226 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.1■□□□□ 0.65
ShhQ62226 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.1■□□□□ 0.65
ShhQ62226 Golgb1-201ENSMUST00000023534 498 ntBASIC19.1■□□□□ 0.65
ShhQ62226 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
ShhQ62226 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ShhQ62226 AC158990.1-201ENSMUST00000221450 2016 ntBASIC19.1■□□□□ 0.65
ShhQ62226 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19.1■□□□□ 0.65
ShhQ62226 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ShhQ62226 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ShhQ62226 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
ShhQ62226 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
ShhQ62226 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC19.09■□□□□ 0.65
ShhQ62226 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
ShhQ62226 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ShhQ62226 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ShhQ62226 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
ShhQ62226 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ShhQ62226 Gm42418-201ENSMUST00000182010 1831 ntBASIC19.09■□□□□ 0.65
ShhQ62226 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
ShhQ62226 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC19.08■□□□□ 0.64
ShhQ62226 Gm29257-201ENSMUST00000186115 639 ntBASIC19.08■□□□□ 0.64
ShhQ62226 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
ShhQ62226 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
ShhQ62226 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
ShhQ62226 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.64
ShhQ62226 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
ShhQ62226 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ShhQ62226 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
ShhQ62226 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ShhQ62226 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ShhQ62226 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC19.07■□□□□ 0.64
ShhQ62226 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC19.07■□□□□ 0.64
ShhQ62226 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.07■□□□□ 0.64
ShhQ62226 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
ShhQ62226 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ShhQ62226 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms