Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 AC006001.1-201ENST00000325130 474 ntBASIC14.09□□□□□ -0.15
BEST3Q8N1M1 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 RPL5P21-201ENST00000404620 815 ntBASIC14.09□□□□□ -0.15
BEST3Q8N1M1 AL139094.1-201ENST00000405549 1188 ntBASIC14.09□□□□□ -0.15
BEST3Q8N1M1 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 RNA5SP486-201ENST00000515961 83 ntBASIC14.09□□□□□ -0.15
BEST3Q8N1M1 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 PACS1-203ENST00000524815 628 ntTSL 4 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 ECM1P1-201ENST00000604092 1279 ntBASIC14.09□□□□□ -0.15
BEST3Q8N1M1 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.09□□□□□ -0.15
BEST3Q8N1M1 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
BEST3Q8N1M1 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.15
BEST3Q8N1M1 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.15
BEST3Q8N1M1 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.08□□□□□ -0.15
BEST3Q8N1M1 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
BEST3Q8N1M1 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 AL645937.2-201ENST00000396808 931 ntBASIC14.08□□□□□ -0.16
BEST3Q8N1M1 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 OLR1-203ENST00000432556 950 ntTSL 2 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 MIR4525-201ENST00000580000 75 ntBASIC14.08□□□□□ -0.16
BEST3Q8N1M1 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 AL645728.2-202ENST00000641679 227 ntBASIC14.08□□□□□ -0.16
BEST3Q8N1M1 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
BEST3Q8N1M1 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms