Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC19.82■□□□□ 0.76
HOXC9P31274 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC19.82■□□□□ 0.76
HOXC9P31274 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC9P31274 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
HOXC9P31274 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC19.82■□□□□ 0.76
HOXC9P31274 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC9P31274 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC19.81■□□□□ 0.76
HOXC9P31274 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC19.81■□□□□ 0.76
HOXC9P31274 AC092978.1-202ENST00000637590 1327 ntBASIC19.81■□□□□ 0.76
HOXC9P31274 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC9P31274 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC9P31274 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC19.81■□□□□ 0.76
HOXC9P31274 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC9P31274 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
HOXC9P31274 AC239868.1-201ENST00000369385 493 ntBASIC19.81■□□□□ 0.76
HOXC9P31274 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC19.81■□□□□ 0.76
HOXC9P31274 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC9P31274 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC9P31274 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
HOXC9P31274 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC9P31274 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC19.81■□□□□ 0.76
HOXC9P31274 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC19.81■□□□□ 0.76
HOXC9P31274 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC19.81■□□□□ 0.76
HOXC9P31274 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC9P31274 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC9P31274 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC9P31274 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC9P31274 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
HOXC9P31274 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC9P31274 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC9P31274 WASH3P-207ENST00000560956 1394 ntBASIC19.81■□□□□ 0.76
HOXC9P31274 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.81■□□□□ 0.76
HOXC9P31274 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
HOXC9P31274 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXC9P31274 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXC9P31274 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
HOXC9P31274 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
HOXC9P31274 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
HOXC9P31274 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXC9P31274 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXC9P31274 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXC9P31274 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC19.8■□□□□ 0.76
HOXC9P31274 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC19.8■□□□□ 0.76
HOXC9P31274 AC019193.1-201ENST00000506678 823 ntBASIC19.8■□□□□ 0.76
HOXC9P31274 IGLV3-15-201ENST00000518356 244 ntBASIC19.8■□□□□ 0.76
HOXC9P31274 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC19.8■□□□□ 0.76
HOXC9P31274 CCNC-217ENST00000523985 958 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXC9P31274 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXC9P31274 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC19.8■□□□□ 0.76
HOXC9P31274 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXC9P31274 MIR6727-201ENST00000620702 65 ntBASIC19.8■□□□□ 0.76
HOXC9P31274 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
HOXC9P31274 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC19.8■□□□□ 0.76
HOXC9P31274 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC19.8■□□□□ 0.76
HOXC9P31274 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC9P31274 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC19.79■□□□□ 0.76
HOXC9P31274 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
HOXC9P31274 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
HOXC9P31274 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC19.79■□□□□ 0.76
HOXC9P31274 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 PKD1P1-201ENST00000458669 6805 ntBASIC19.79■□□□□ 0.76
HOXC9P31274 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
HOXC9P31274 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC19.79■□□□□ 0.76
HOXC9P31274 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
HOXC9P31274 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC19.79■□□□□ 0.76
HOXC9P31274 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 MIR3147-201ENST00000577811 66 ntBASIC19.79■□□□□ 0.76
HOXC9P31274 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
HOXC9P31274 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC19.79■□□□□ 0.76
HOXC9P31274 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC19.79■□□□□ 0.76
HOXC9P31274 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC19.79■□□□□ 0.76
HOXC9P31274 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC9P31274 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
HOXC9P31274 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms