Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGB1P09429 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 AP001063.1-201ENST00000568332 529 ntBASIC17.96■□□□□ 0.47
HMGB1P09429 TP53TG3HP-202ENST00000569755 579 ntBASIC17.96■□□□□ 0.47
HMGB1P09429 CTBP2P3-201ENST00000585629 1255 ntBASIC17.96■□□□□ 0.47
HMGB1P09429 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGB1P09429 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HMGB1P09429 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.96■□□□□ 0.47
HMGB1P09429 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGB1P09429 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGB1P09429 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.96■□□□□ 0.47
HMGB1P09429 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC17.96■□□□□ 0.47
HMGB1P09429 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGB1P09429 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
HMGB1P09429 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
HMGB1P09429 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
HMGB1P09429 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 AC232323.1-201ENST00000540724 2099 ntBASIC17.95■□□□□ 0.46
HMGB1P09429 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.95■□□□□ 0.46
HMGB1P09429 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.95■□□□□ 0.46
HMGB1P09429 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 RNU1-114P-201ENST00000365297 166 ntBASIC17.95■□□□□ 0.46
HMGB1P09429 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 PGGT1BP2-201ENST00000398621 1028 ntBASIC17.95■□□□□ 0.46
HMGB1P09429 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.95■□□□□ 0.46
HMGB1P09429 KLF2P2-201ENST00000416807 1039 ntBASIC17.95■□□□□ 0.46
HMGB1P09429 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.95■□□□□ 0.46
HMGB1P09429 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
HMGB1P09429 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 AC190387.1-201ENST00000551683 408 ntBASIC17.95■□□□□ 0.46
HMGB1P09429 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.95■□□□□ 0.46
HMGB1P09429 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
HMGB1P09429 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.95■□□□□ 0.46
HMGB1P09429 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC17.95■□□□□ 0.46
HMGB1P09429 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
HMGB1P09429 AC005252.2-201ENST00000624630 1141 ntBASIC17.95■□□□□ 0.46
HMGB1P09429 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC17.95■□□□□ 0.46
HMGB1P09429 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
HMGB1P09429 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
HMGB1P09429 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
HMGB1P09429 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
HMGB1P09429 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.95■□□□□ 0.46
HMGB1P09429 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC17.95■□□□□ 0.46
HMGB1P09429 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC17.95■□□□□ 0.46
HMGB1P09429 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB1P09429 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
HMGB1P09429 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB1P09429 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB1P09429 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB1P09429 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
HMGB1P09429 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
HMGB1P09429 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGB1P09429 GSN-203ENST00000373808 2664 ntTSL 2 BASIC17.94■□□□□ 0.46
HMGB1P09429 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
HMGB1P09429 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB1P09429 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB1P09429 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
HMGB1P09429 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB1P09429 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
HMGB1P09429 GIMAP3P-201ENST00000495150 836 ntBASIC17.94■□□□□ 0.46
HMGB1P09429 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGB1P09429 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC17.94■□□□□ 0.46
HMGB1P09429 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.94■□□□□ 0.46
HMGB1P09429 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.94■□□□□ 0.46
HMGB1P09429 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.94■□□□□ 0.46
HMGB1P09429 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB1P09429 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB1P09429 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGB1P09429 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC17.94■□□□□ 0.46
HMGB1P09429 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB1P09429 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB1P09429 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
HMGB1P09429 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
HMGB1P09429 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB1P09429 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms