Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
SEMA3DO95025 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.66□□□□□ -0.06
SEMA3DO95025 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.66□□□□□ -0.06
SEMA3DO95025 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SEMA3DO95025 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.66□□□□□ -0.06
SEMA3DO95025 AC013726.1-201ENST00000563747 2285 ntBASIC14.66□□□□□ -0.06
SEMA3DO95025 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 ACE3P-201ENST00000423435 1973 ntBASIC14.66□□□□□ -0.06
SEMA3DO95025 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.66□□□□□ -0.06
SEMA3DO95025 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.66□□□□□ -0.06
SEMA3DO95025 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.66□□□□□ -0.06
SEMA3DO95025 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SEMA3DO95025 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 MIR770-201ENST00000390219 98 ntBASIC14.66□□□□□ -0.06
SEMA3DO95025 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
SEMA3DO95025 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.66□□□□□ -0.06
SEMA3DO95025 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.66□□□□□ -0.06
SEMA3DO95025 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SEMA3DO95025 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.66□□□□□ -0.06
SEMA3DO95025 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.66□□□□□ -0.06
SEMA3DO95025 AL049840.4-201ENST00000602422 811 ntBASIC14.66□□□□□ -0.06
SEMA3DO95025 AJ011932.1-201ENST00000621707 465 ntBASIC14.66□□□□□ -0.06
SEMA3DO95025 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.66□□□□□ -0.06
SEMA3DO95025 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.66□□□□□ -0.06
SEMA3DO95025 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.66□□□□□ -0.06
SEMA3DO95025 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.66□□□□□ -0.06
SEMA3DO95025 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SEMA3DO95025 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SEMA3DO95025 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SEMA3DO95025 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 AC106881.1-201ENST00000605849 3329 ntBASIC14.66□□□□□ -0.06
SEMA3DO95025 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.66□□□□□ -0.06
SEMA3DO95025 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.65□□□□□ -0.06
SEMA3DO95025 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SEMA3DO95025 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SEMA3DO95025 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SEMA3DO95025 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
SEMA3DO95025 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
SEMA3DO95025 AC139749.1-202ENST00000617529 3139 ntBASIC14.65□□□□□ -0.06
SEMA3DO95025 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SEMA3DO95025 SLC7A15P-201ENST00000424028 1363 ntBASIC14.65□□□□□ -0.06
SEMA3DO95025 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SEMA3DO95025 OR2I1P-210ENST00000642037 4691 ntBASIC14.65□□□□□ -0.06
SEMA3DO95025 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SEMA3DO95025 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SEMA3DO95025 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SEMA3DO95025 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
SEMA3DO95025 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.65□□□□□ -0.06
SEMA3DO95025 AL645937.2-201ENST00000396808 931 ntBASIC14.65□□□□□ -0.06
SEMA3DO95025 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.65□□□□□ -0.06
SEMA3DO95025 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.65□□□□□ -0.06
SEMA3DO95025 AL353779.1-201ENST00000434793 351 ntBASIC14.65□□□□□ -0.06
SEMA3DO95025 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.65□□□□□ -0.06
SEMA3DO95025 SPTLC1P1-201ENST00000447199 261 ntBASIC14.65□□□□□ -0.06
SEMA3DO95025 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.65□□□□□ -0.06
SEMA3DO95025 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.65□□□□□ -0.06
SEMA3DO95025 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.65□□□□□ -0.06
SEMA3DO95025 AC027796.2-201ENST00000575326 344 ntBASIC14.65□□□□□ -0.06
SEMA3DO95025 BRI3BPP1-201ENST00000594224 787 ntBASIC14.65□□□□□ -0.06
SEMA3DO95025 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SEMA3DO95025 AC107373.2-201ENST00000607735 490 ntBASIC14.65□□□□□ -0.06
SEMA3DO95025 AL662799.1-202ENST00000614205 422 ntBASIC14.65□□□□□ -0.06
SEMA3DO95025 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.65□□□□□ -0.06
SEMA3DO95025 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.65□□□□□ -0.06
SEMA3DO95025 GRK6P1-201ENST00000400595 1711 ntBASIC14.65□□□□□ -0.06
SEMA3DO95025 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
SEMA3DO95025 LINC00528-201ENST00000600723 2160 ntBASIC14.65□□□□□ -0.06
SEMA3DO95025 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
SEMA3DO95025 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
SEMA3DO95025 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.65□□□□□ -0.06
SEMA3DO95025 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
SEMA3DO95025 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
SEMA3DO95025 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SEMA3DO95025 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SEMA3DO95025 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms