Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC12.91□□□□□ -0.34
Sf3b1Q99NB9 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sf3b1Q99NB9 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sf3b1Q99NB9 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sf3b1Q99NB9 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sf3b1Q99NB9 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC12.91□□□□□ -0.34
Sf3b1Q99NB9 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC12.91□□□□□ -0.34
Sf3b1Q99NB9 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sf3b1Q99NB9 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Sf3b1Q99NB9 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sf3b1Q99NB9 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Sf3b1Q99NB9 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sf3b1Q99NB9 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Sf3b1Q99NB9 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sf3b1Q99NB9 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sf3b1Q99NB9 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Gm23596-201ENSMUST00000104304 132 ntBASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Gm11941-201ENSMUST00000119904 610 ntBASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Gm12196-201ENSMUST00000120954 262 ntBASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 AC154680.1-201ENSMUST00000224376 859 ntBASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Gm26448-201ENSMUST00000082446 203 ntBASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Gm28719-201ENSMUST00000187779 1757 ntBASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sf3b1Q99NB9 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
Sf3b1Q99NB9 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.35
Sf3b1Q99NB9 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.35
Sf3b1Q99NB9 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Sf3b1Q99NB9 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Gm23912-201ENSMUST00000104687 87 ntBASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Gm7722-201ENSMUST00000120646 741 ntBASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Gm25881-201ENSMUST00000157783 103 ntBASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 H2-Q3-201ENSMUST00000172583 608 ntBASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Gm24514-201ENSMUST00000174961 285 ntBASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Gm9211-201ENSMUST00000182882 975 ntBASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Gm4157-201ENSMUST00000211647 679 ntBASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Gm10702-201ENSMUST00000098929 1268 ntBASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms