Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL8A1P27658 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL8A1P27658 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL8A1P27658 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL8A1P27658 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC13.33□□□□□ -0.28
COL8A1P27658 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL8A1P27658 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL8A1P27658 IDS-203ENST00000428056 1213 ntTSL 2 BASIC13.33□□□□□ -0.28
COL8A1P27658 FAU-202ENST00000434372 533 ntTSL 2 BASIC13.33□□□□□ -0.28
COL8A1P27658 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC13.33□□□□□ -0.28
COL8A1P27658 AC079112.1-201ENST00000454972 939 ntBASIC13.33□□□□□ -0.28
COL8A1P27658 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC13.33□□□□□ -0.28
COL8A1P27658 AL157792.1-201ENST00000488281 530 ntBASIC13.33□□□□□ -0.28
COL8A1P27658 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.33□□□□□ -0.28
COL8A1P27658 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC13.33□□□□□ -0.28
COL8A1P27658 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
COL8A1P27658 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.33□□□□□ -0.28
COL8A1P27658 CSH2-206ENST00000560142 749 ntTSL 5 BASIC13.33□□□□□ -0.28
COL8A1P27658 CMC2-214ENST00000565925 640 ntTSL 5 BASIC13.33□□□□□ -0.28
COL8A1P27658 RN7SL163P-201ENST00000583100 276 ntBASIC13.33□□□□□ -0.28
COL8A1P27658 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC13.33□□□□□ -0.28
COL8A1P27658 BNIP3P13-201ENST00000599968 566 ntBASIC13.33□□□□□ -0.28
COL8A1P27658 AL023803.2-201ENST00000620080 638 ntBASIC13.33□□□□□ -0.28
COL8A1P27658 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL8A1P27658 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL8A1P27658 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC13.33□□□□□ -0.28
COL8A1P27658 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC13.33□□□□□ -0.28
COL8A1P27658 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL8A1P27658 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL8A1P27658 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL8A1P27658 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.33□□□□□ -0.28
COL8A1P27658 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC13.33□□□□□ -0.28
COL8A1P27658 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
COL8A1P27658 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
COL8A1P27658 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC13.33□□□□□ -0.28
COL8A1P27658 AL592424.1-201ENST00000563624 1536 ntBASIC13.33□□□□□ -0.28
COL8A1P27658 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL8A1P27658 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.32□□□□□ -0.28
COL8A1P27658 AL162727.3-201ENST00000635661 2787 ntBASIC13.32□□□□□ -0.28
COL8A1P27658 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC13.32□□□□□ -0.28
COL8A1P27658 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC13.32□□□□□ -0.28
COL8A1P27658 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC13.32□□□□□ -0.28
COL8A1P27658 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC13.32□□□□□ -0.28
COL8A1P27658 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC13.32□□□□□ -0.28
COL8A1P27658 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC13.32□□□□□ -0.28
COL8A1P27658 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
COL8A1P27658 AL627231.1-201ENST00000394467 1125 ntBASIC13.32□□□□□ -0.28
COL8A1P27658 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 AL353637.1-201ENST00000451571 732 ntBASIC13.32□□□□□ -0.28
COL8A1P27658 AC245100.5-201ENST00000452108 331 ntBASIC13.32□□□□□ -0.28
COL8A1P27658 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.32□□□□□ -0.28
COL8A1P27658 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC13.32□□□□□ -0.28
COL8A1P27658 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
COL8A1P27658 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
COL8A1P27658 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC13.32□□□□□ -0.28
COL8A1P27658 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC13.32□□□□□ -0.28
COL8A1P27658 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC13.32□□□□□ -0.28
COL8A1P27658 YRDCP1-201ENST00000621419 643 ntBASIC13.32□□□□□ -0.28
COL8A1P27658 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC13.32□□□□□ -0.28
COL8A1P27658 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC13.32□□□□□ -0.28
COL8A1P27658 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.32□□□□□ -0.28
COL8A1P27658 AC060834.1-201ENST00000443027 2032 ntBASIC13.32□□□□□ -0.28
COL8A1P27658 FLJ38576-201ENST00000623820 2459 ntBASIC13.32□□□□□ -0.28
COL8A1P27658 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL8A1P27658 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC13.31□□□□□ -0.28
COL8A1P27658 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
COL8A1P27658 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 TBC1D3J-201ENST00000620719 1426 ntBASIC13.31□□□□□ -0.28
COL8A1P27658 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL8A1P27658 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms