Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ubfd1Q78JW9 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ubfd1Q78JW9 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC11.9□□□□□ -0.5
Ubfd1Q78JW9 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Ubfd1Q78JW9 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC11.9□□□□□ -0.5
Ubfd1Q78JW9 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Ubfd1Q78JW9 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Ubfd1Q78JW9 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Ubfd1Q78JW9 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Ubfd1Q78JW9 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.51
Ubfd1Q78JW9 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Ubfd1Q78JW9 Gm5525-201ENSMUST00000190438 1312 ntBASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 AC171277.1-201ENSMUST00000216902 1441 ntBASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Gm6039-201ENSMUST00000121667 1250 ntBASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Gm4607-201ENSMUST00000206649 577 ntBASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Gm7848-201ENSMUST00000210739 718 ntBASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Gm4157-201ENSMUST00000211647 679 ntBASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 AC116503.1-201ENSMUST00000215445 2192 ntBASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Ubfd1Q78JW9 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Gm26286-201ENSMUST00000104166 134 ntBASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Gm14247-201ENSMUST00000120950 237 ntBASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Gm8343-201ENSMUST00000182705 994 ntBASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 AC131330.1-201ENSMUST00000227814 1015 ntBASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Gm26448-201ENSMUST00000082446 203 ntBASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Nudt18-202ENSMUST00000228554 3619 ntBASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Ubfd1Q78JW9 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Gm42480-201ENSMUST00000198434 2595 ntBASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC11.87□□□□□ -0.51
Ubfd1Q78JW9 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms