Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
Ushbp1Q8R370 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
Ushbp1Q8R370 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ushbp1Q8R370 Gm28536-201ENSMUST00000190971 1317 ntBASIC23.32■■□□□ 1.32
Ushbp1Q8R370 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
Ushbp1Q8R370 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Ushbp1Q8R370 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Ushbp1Q8R370 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ushbp1Q8R370 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ushbp1Q8R370 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
Ushbp1Q8R370 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ushbp1Q8R370 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ushbp1Q8R370 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Ushbp1Q8R370 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ushbp1Q8R370 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ushbp1Q8R370 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC23.3■■□□□ 1.32
Ushbp1Q8R370 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ushbp1Q8R370 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC23.3■■□□□ 1.32
Ushbp1Q8R370 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ushbp1Q8R370 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
Ushbp1Q8R370 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ushbp1Q8R370 Gm16464-201ENSMUST00000117815 1095 ntBASIC23.29■■□□□ 1.32
Ushbp1Q8R370 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
Ushbp1Q8R370 Gm11847-201ENSMUST00000125165 1119 ntBASIC23.29■■□□□ 1.32
Ushbp1Q8R370 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ushbp1Q8R370 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC23.29■■□□□ 1.32
Ushbp1Q8R370 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ushbp1Q8R370 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ushbp1Q8R370 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC23.28■■□□□ 1.32
Ushbp1Q8R370 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ushbp1Q8R370 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ushbp1Q8R370 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Ushbp1Q8R370 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ushbp1Q8R370 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC23.27■■□□□ 1.32
Ushbp1Q8R370 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Ushbp1Q8R370 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ushbp1Q8R370 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC23.26■■□□□ 1.31
Ushbp1Q8R370 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ushbp1Q8R370 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Ushbp1Q8R370 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ushbp1Q8R370 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ushbp1Q8R370 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC23.25■■□□□ 1.31
Ushbp1Q8R370 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ushbp1Q8R370 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ushbp1Q8R370 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC23.25■■□□□ 1.31
Ushbp1Q8R370 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ushbp1Q8R370 Gm13241-201ENSMUST00000094493 780 ntBASIC23.25■■□□□ 1.31
Ushbp1Q8R370 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ushbp1Q8R370 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ushbp1Q8R370 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Ushbp1Q8R370 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Ushbp1Q8R370 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC23.24■■□□□ 1.31
Ushbp1Q8R370 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC23.24■■□□□ 1.31
Ushbp1Q8R370 Gm43034-201ENSMUST00000198678 1364 ntBASIC23.24■■□□□ 1.31
Ushbp1Q8R370 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ushbp1Q8R370 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ushbp1Q8R370 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC23.23■■□□□ 1.31
Ushbp1Q8R370 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC23.23■■□□□ 1.31
Ushbp1Q8R370 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Ushbp1Q8R370 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC23.23■■□□□ 1.31
Ushbp1Q8R370 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ushbp1Q8R370 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ushbp1Q8R370 Gm8093-201ENSMUST00000128935 1892 ntBASIC23.22■■□□□ 1.31
Ushbp1Q8R370 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC23.22■■□□□ 1.31
Ushbp1Q8R370 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC23.22■■□□□ 1.31
Ushbp1Q8R370 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ushbp1Q8R370 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ushbp1Q8R370 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ushbp1Q8R370 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ushbp1Q8R370 Gm38160-201ENSMUST00000193090 2499 ntBASIC23.21■■□□□ 1.31
Ushbp1Q8R370 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Ushbp1Q8R370 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ushbp1Q8R370 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Ushbp1Q8R370 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC23.21■■□□□ 1.31
Ushbp1Q8R370 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ushbp1Q8R370 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ushbp1Q8R370 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Ushbp1Q8R370 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
Ushbp1Q8R370 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ushbp1Q8R370 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ushbp1Q8R370 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC23.2■■□□□ 1.3
Ushbp1Q8R370 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC23.2■■□□□ 1.3
Ushbp1Q8R370 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Ushbp1Q8R370 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
Ushbp1Q8R370 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ushbp1Q8R370 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ushbp1Q8R370 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ushbp1Q8R370 Gm44949-201ENSMUST00000206423 1450 ntBASIC23.18■■□□□ 1.3
Ushbp1Q8R370 Kdm3b-204ENSMUST00000224715 2032 ntBASIC23.18■■□□□ 1.3
Ushbp1Q8R370 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Ushbp1Q8R370 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Ushbp1Q8R370 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ushbp1Q8R370 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ushbp1Q8R370 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC23.18■■□□□ 1.3
Ushbp1Q8R370 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ushbp1Q8R370 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ushbp1Q8R370 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ushbp1Q8R370 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
Ushbp1Q8R370 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Ushbp1Q8R370 Gm9847-201ENSMUST00000052528 599 ntBASIC23.17■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms