Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Trim56Q80VI1 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Trim56Q80VI1 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC24.72■■□□□ 1.55
Trim56Q80VI1 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
Trim56Q80VI1 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Trim56Q80VI1 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
Trim56Q80VI1 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
Trim56Q80VI1 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Trim56Q80VI1 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
Trim56Q80VI1 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC24.71■■□□□ 1.55
Trim56Q80VI1 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
Trim56Q80VI1 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Trim56Q80VI1 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
Trim56Q80VI1 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Trim56Q80VI1 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Trim56Q80VI1 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC24.7■■□□□ 1.54
Trim56Q80VI1 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Trim56Q80VI1 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Trim56Q80VI1 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC24.69■■□□□ 1.54
Trim56Q80VI1 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC24.68■■□□□ 1.54
Trim56Q80VI1 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Trim56Q80VI1 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Trim56Q80VI1 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Trim56Q80VI1 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Trim56Q80VI1 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Trim56Q80VI1 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Trim56Q80VI1 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Trim56Q80VI1 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Trim56Q80VI1 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
Trim56Q80VI1 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC24.67■■□□□ 1.54
Trim56Q80VI1 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC24.67■■□□□ 1.54
Trim56Q80VI1 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC24.67■■□□□ 1.54
Trim56Q80VI1 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Trim56Q80VI1 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
Trim56Q80VI1 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Trim56Q80VI1 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Trim56Q80VI1 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Trim56Q80VI1 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Trim56Q80VI1 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Trim56Q80VI1 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Trim56Q80VI1 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Trim56Q80VI1 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Trim56Q80VI1 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Trim56Q80VI1 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Trim56Q80VI1 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Trim56Q80VI1 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Trim56Q80VI1 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
Trim56Q80VI1 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Trim56Q80VI1 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Trim56Q80VI1 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Trim56Q80VI1 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
Trim56Q80VI1 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC24.64■■□□□ 1.54
Trim56Q80VI1 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Trim56Q80VI1 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Trim56Q80VI1 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
Trim56Q80VI1 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Trim56Q80VI1 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.53
Trim56Q80VI1 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Trim56Q80VI1 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Trim56Q80VI1 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC24.63■■□□□ 1.53
Trim56Q80VI1 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Trim56Q80VI1 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Trim56Q80VI1 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
Trim56Q80VI1 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
Trim56Q80VI1 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Trim56Q80VI1 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Trim56Q80VI1 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Trim56Q80VI1 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC24.62■■□□□ 1.53
Trim56Q80VI1 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
Trim56Q80VI1 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
Trim56Q80VI1 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Trim56Q80VI1 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Trim56Q80VI1 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Trim56Q80VI1 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
Trim56Q80VI1 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC24.61■■□□□ 1.53
Trim56Q80VI1 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Trim56Q80VI1 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC24.6■■□□□ 1.53
Trim56Q80VI1 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC24.6■■□□□ 1.53
Trim56Q80VI1 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
Trim56Q80VI1 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC24.6■■□□□ 1.53
Trim56Q80VI1 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Trim56Q80VI1 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.53
Trim56Q80VI1 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC24.6■■□□□ 1.53
Trim56Q80VI1 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
Trim56Q80VI1 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Trim56Q80VI1 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Trim56Q80VI1 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
Trim56Q80VI1 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Trim56Q80VI1 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Trim56Q80VI1 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC24.59■■□□□ 1.53
Trim56Q80VI1 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
Trim56Q80VI1 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Trim56Q80VI1 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
Trim56Q80VI1 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC24.58■■□□□ 1.53
Trim56Q80VI1 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC24.58■■□□□ 1.53
Trim56Q80VI1 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
Trim56Q80VI1 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
Trim56Q80VI1 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
Trim56Q80VI1 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Trim56Q80VI1 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC24.57■■□□□ 1.52
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms