Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Trav6d-4Q5R1I0 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6d-4Q5R1I0 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6d-4Q5R1I0 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6d-4Q5R1I0 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6d-4Q5R1I0 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC17.49■□□□□ 0.39
Trav6d-4Q5R1I0 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6d-4Q5R1I0 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6d-4Q5R1I0 Gm4430-201ENSMUST00000192413 1943 ntBASIC17.49■□□□□ 0.39
Trav6d-4Q5R1I0 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6d-4Q5R1I0 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trav6d-4Q5R1I0 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
Trav6d-4Q5R1I0 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav6d-4Q5R1I0 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav6d-4Q5R1I0 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav6d-4Q5R1I0 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav6d-4Q5R1I0 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav6d-4Q5R1I0 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav6d-4Q5R1I0 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC17.47■□□□□ 0.39
Trav6d-4Q5R1I0 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
Trav6d-4Q5R1I0 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav6d-4Q5R1I0 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav6d-4Q5R1I0 AC164883.3-201ENSMUST00000227396 1774 ntBASIC17.47■□□□□ 0.39
Trav6d-4Q5R1I0 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Trav6d-4Q5R1I0 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav6d-4Q5R1I0 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav6d-4Q5R1I0 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav6d-4Q5R1I0 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC17.46■□□□□ 0.39
Trav6d-4Q5R1I0 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC17.46■□□□□ 0.39
Trav6d-4Q5R1I0 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trav6d-4Q5R1I0 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav6d-4Q5R1I0 Gm9847-201ENSMUST00000052528 599 ntBASIC17.46■□□□□ 0.39
Trav6d-4Q5R1I0 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Trav6d-4Q5R1I0 Kdm3b-204ENSMUST00000224715 2032 ntBASIC17.46■□□□□ 0.39
Trav6d-4Q5R1I0 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav6d-4Q5R1I0 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav6d-4Q5R1I0 Gm37415-201ENSMUST00000192265 2054 ntBASIC17.46■□□□□ 0.39
Trav6d-4Q5R1I0 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav6d-4Q5R1I0 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC17.45■□□□□ 0.38
Trav6d-4Q5R1I0 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav6d-4Q5R1I0 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav6d-4Q5R1I0 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC17.45■□□□□ 0.38
Trav6d-4Q5R1I0 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav6d-4Q5R1I0 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav6d-4Q5R1I0 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav6d-4Q5R1I0 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav6d-4Q5R1I0 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav6d-4Q5R1I0 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC17.44■□□□□ 0.38
Trav6d-4Q5R1I0 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trav6d-4Q5R1I0 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Trav6d-4Q5R1I0 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trav6d-4Q5R1I0 Gm26766-202ENSMUST00000227544 2347 ntBASIC17.44■□□□□ 0.38
Trav6d-4Q5R1I0 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav6d-4Q5R1I0 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav6d-4Q5R1I0 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
Trav6d-4Q5R1I0 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Trav6d-4Q5R1I0 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav6d-4Q5R1I0 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav6d-4Q5R1I0 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trav6d-4Q5R1I0 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav6d-4Q5R1I0 Gm12922-201ENSMUST00000120626 809 ntBASIC17.43■□□□□ 0.38
Trav6d-4Q5R1I0 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC17.43■□□□□ 0.38
Trav6d-4Q5R1I0 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC17.43■□□□□ 0.38
Trav6d-4Q5R1I0 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav6d-4Q5R1I0 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
Trav6d-4Q5R1I0 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Trav6d-4Q5R1I0 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trav6d-4Q5R1I0 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trav6d-4Q5R1I0 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC17.42■□□□□ 0.38
Trav6d-4Q5R1I0 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
Trav6d-4Q5R1I0 Gm13241-201ENSMUST00000094493 780 ntBASIC17.42■□□□□ 0.38
Trav6d-4Q5R1I0 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav6d-4Q5R1I0 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trav6d-4Q5R1I0 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav6d-4Q5R1I0 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav6d-4Q5R1I0 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC17.41■□□□□ 0.38
Trav6d-4Q5R1I0 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Trav6d-4Q5R1I0 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC17.41■□□□□ 0.38
Trav6d-4Q5R1I0 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Trav6d-4Q5R1I0 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav6d-4Q5R1I0 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav6d-4Q5R1I0 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trav6d-4Q5R1I0 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav6d-4Q5R1I0 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
Trav6d-4Q5R1I0 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC17.4■□□□□ 0.38
Trav6d-4Q5R1I0 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav6d-4Q5R1I0 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav6d-4Q5R1I0 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Trav6d-4Q5R1I0 Gm9870-201ENSMUST00000063874 645 ntBASIC17.39■□□□□ 0.37
Trav6d-4Q5R1I0 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC17.39■□□□□ 0.37
Trav6d-4Q5R1I0 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav6d-4Q5R1I0 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Trav6d-4Q5R1I0 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav6d-4Q5R1I0 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav6d-4Q5R1I0 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav6d-4Q5R1I0 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trav6d-4Q5R1I0 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav6d-4Q5R1I0 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav6d-4Q5R1I0 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav6d-4Q5R1I0 Gm43403-201ENSMUST00000198011 1786 ntBASIC17.38■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms