Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Msx1P13297 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC19.66■□□□□ 0.74
Msx1P13297 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
Msx1P13297 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Msx1P13297 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Msx1P13297 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Msx1P13297 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Msx1P13297 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC19.66■□□□□ 0.74
Msx1P13297 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Msx1P13297 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Msx1P13297 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Msx1P13297 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
Msx1P13297 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Msx1P13297 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Msx1P13297 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.65■□□□□ 0.74
Msx1P13297 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Msx1P13297 Gm45417-201ENSMUST00000209533 758 ntBASIC19.65■□□□□ 0.74
Msx1P13297 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
Msx1P13297 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Msx1P13297 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Msx1P13297 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Msx1P13297 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Msx1P13297 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC19.64■□□□□ 0.73
Msx1P13297 Dmtn-209ENSMUST00000228295 2572 ntBASIC19.64■□□□□ 0.73
Msx1P13297 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Msx1P13297 Gm42418-201ENSMUST00000182010 1831 ntBASIC19.63■□□□□ 0.73
Msx1P13297 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Msx1P13297 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Msx1P13297 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Msx1P13297 Slc35b2-207ENSMUST00000226086 850 ntBASIC19.63■□□□□ 0.73
Msx1P13297 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Msx1P13297 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
Msx1P13297 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Msx1P13297 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Msx1P13297 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Msx1P13297 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Msx1P13297 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Msx1P13297 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Msx1P13297 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Msx1P13297 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Msx1P13297 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Msx1P13297 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Msx1P13297 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Msx1P13297 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Msx1P13297 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Msx1P13297 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Msx1P13297 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Msx1P13297 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Msx1P13297 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Msx1P13297 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Msx1P13297 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Msx1P13297 Gm37415-201ENSMUST00000192265 2054 ntBASIC19.61■□□□□ 0.73
Msx1P13297 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Msx1P13297 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msx1P13297 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msx1P13297 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC19.6■□□□□ 0.73
Msx1P13297 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC19.6■□□□□ 0.73
Msx1P13297 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Msx1P13297 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC19.6■□□□□ 0.73
Msx1P13297 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Msx1P13297 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msx1P13297 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msx1P13297 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msx1P13297 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Msx1P13297 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Msx1P13297 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC19.59■□□□□ 0.73
Msx1P13297 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Msx1P13297 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Msx1P13297 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Msx1P13297 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
Msx1P13297 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Msx1P13297 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.72
Msx1P13297 Golgb1-201ENSMUST00000023534 498 ntBASIC19.58■□□□□ 0.72
Msx1P13297 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Msx1P13297 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Msx1P13297 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Msx1P13297 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Msx1P13297 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Msx1P13297 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Msx1P13297 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Msx1P13297 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Msx1P13297 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Msx1P13297 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Msx1P13297 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msx1P13297 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msx1P13297 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msx1P13297 Flvcr1-202ENSMUST00000191946 1216 ntBASIC19.57■□□□□ 0.72
Msx1P13297 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Msx1P13297 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Msx1P13297 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msx1P13297 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Msx1P13297 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msx1P13297 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msx1P13297 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msx1P13297 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msx1P13297 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msx1P13297 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Msx1P13297 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC19.56■□□□□ 0.72
Msx1P13297 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Msx1P13297 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 60.2 ms