Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hmgb3O54879 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Hmgb3O54879 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hmgb3O54879 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hmgb3O54879 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
Hmgb3O54879 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
Hmgb3O54879 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hmgb3O54879 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hmgb3O54879 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Hmgb3O54879 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Hmgb3O54879 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
Hmgb3O54879 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Hmgb3O54879 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Hmgb3O54879 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Hmgb3O54879 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Hmgb3O54879 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Hmgb3O54879 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Hmgb3O54879 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Hmgb3O54879 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Hmgb3O54879 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Hmgb3O54879 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC17.19■□□□□ 0.34
Hmgb3O54879 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC17.19■□□□□ 0.34
Hmgb3O54879 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Hmgb3O54879 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Hmgb3O54879 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Hmgb3O54879 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Hmgb3O54879 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Hmgb3O54879 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
Hmgb3O54879 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Hmgb3O54879 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Hmgb3O54879 AC131739.1-201ENSMUST00000221692 1245 ntBASIC17.18■□□□□ 0.34
Hmgb3O54879 Gm9939-201ENSMUST00000067161 1154 ntBASIC17.18■□□□□ 0.34
Hmgb3O54879 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Hmgb3O54879 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Hmgb3O54879 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
Hmgb3O54879 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Hmgb3O54879 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb3O54879 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb3O54879 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb3O54879 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Hmgb3O54879 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Hmgb3O54879 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb3O54879 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Hmgb3O54879 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb3O54879 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Hmgb3O54879 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb3O54879 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC17.16■□□□□ 0.34
Hmgb3O54879 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb3O54879 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC17.16■□□□□ 0.34
Hmgb3O54879 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC17.16■□□□□ 0.34
Hmgb3O54879 Gm9812-201ENSMUST00000061934 968 ntBASIC17.16■□□□□ 0.34
Hmgb3O54879 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb3O54879 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC17.16■□□□□ 0.34
Hmgb3O54879 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb3O54879 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb3O54879 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb3O54879 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Hmgb3O54879 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb3O54879 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC17.15■□□□□ 0.34
Hmgb3O54879 AC117245.4-201ENSMUST00000217388 1646 ntBASIC17.15■□□□□ 0.34
Hmgb3O54879 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb3O54879 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb3O54879 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb3O54879 Gm6821-201ENSMUST00000107540 542 ntBASIC17.15■□□□□ 0.34
Hmgb3O54879 AC122317.2-201ENSMUST00000218708 1248 ntBASIC17.15■□□□□ 0.34
Hmgb3O54879 AC153911.1-201ENSMUST00000220378 758 ntBASIC17.15■□□□□ 0.34
Hmgb3O54879 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Hmgb3O54879 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb3O54879 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb3O54879 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb3O54879 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb3O54879 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb3O54879 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb3O54879 Iqck-206ENSMUST00000208658 2891 ntBASIC17.14■□□□□ 0.34
Hmgb3O54879 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Hmgb3O54879 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb3O54879 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb3O54879 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
Hmgb3O54879 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb3O54879 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC17.14■□□□□ 0.33
Hmgb3O54879 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb3O54879 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb3O54879 Terc-201ENSMUST00000082862 423 ntBASIC17.13■□□□□ 0.33
Hmgb3O54879 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb3O54879 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Hmgb3O54879 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb3O54879 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC17.13■□□□□ 0.33
Hmgb3O54879 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb3O54879 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb3O54879 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb3O54879 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb3O54879 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Hmgb3O54879 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb3O54879 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb3O54879 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb3O54879 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC17.12■□□□□ 0.33
Hmgb3O54879 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Hmgb3O54879 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb3O54879 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC17.12■□□□□ 0.33
Hmgb3O54879 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms