Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pcdh1F7BJK1 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pcdh1F7BJK1 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pcdh1F7BJK1 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Pcdh1F7BJK1 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Pcdh1F7BJK1 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pcdh1F7BJK1 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pcdh1F7BJK1 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pcdh1F7BJK1 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pcdh1F7BJK1 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Pcdh1F7BJK1 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pcdh1F7BJK1 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Pcdh1F7BJK1 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Pcdh1F7BJK1 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Pcdh1F7BJK1 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Pcdh1F7BJK1 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC18.67■□□□□ 0.58
Pcdh1F7BJK1 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Pcdh1F7BJK1 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Pcdh1F7BJK1 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Pcdh1F7BJK1 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Pcdh1F7BJK1 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Pcdh1F7BJK1 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Pcdh1F7BJK1 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Pcdh1F7BJK1 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Pcdh1F7BJK1 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Pcdh1F7BJK1 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Pcdh1F7BJK1 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Pcdh1F7BJK1 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Pcdh1F7BJK1 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Pcdh1F7BJK1 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Pcdh1F7BJK1 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Pcdh1F7BJK1 AC116713.1-201ENSMUST00000215074 430 ntBASIC18.65■□□□□ 0.58
Pcdh1F7BJK1 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Pcdh1F7BJK1 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Pcdh1F7BJK1 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Pcdh1F7BJK1 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Pcdh1F7BJK1 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Pcdh1F7BJK1 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Pcdh1F7BJK1 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Pcdh1F7BJK1 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Pcdh1F7BJK1 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
Pcdh1F7BJK1 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Pcdh1F7BJK1 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Pcdh1F7BJK1 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pcdh1F7BJK1 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Pcdh1F7BJK1 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pcdh1F7BJK1 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pcdh1F7BJK1 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Pcdh1F7BJK1 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Pcdh1F7BJK1 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pcdh1F7BJK1 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC18.63■□□□□ 0.57
Pcdh1F7BJK1 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pcdh1F7BJK1 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pcdh1F7BJK1 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pcdh1F7BJK1 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pcdh1F7BJK1 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Pcdh1F7BJK1 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdh1F7BJK1 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Pcdh1F7BJK1 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Pcdh1F7BJK1 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Pcdh1F7BJK1 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Pcdh1F7BJK1 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Pcdh1F7BJK1 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Pcdh1F7BJK1 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Pcdh1F7BJK1 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.61■□□□□ 0.57
Pcdh1F7BJK1 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Pcdh1F7BJK1 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC18.61■□□□□ 0.57
Pcdh1F7BJK1 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Pcdh1F7BJK1 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC18.61■□□□□ 0.57
Pcdh1F7BJK1 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 71.9 ms