Protein–RNA interactions for Protein: A0A0G2JEM0

Trav3n-3, T cell receptor alpha variable 3D-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3n-3A0A0G2JEM0 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav3n-3A0A0G2JEM0 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Trav3n-3A0A0G2JEM0 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC15.59■□□□□ 0.09
Trav3n-3A0A0G2JEM0 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav3n-3A0A0G2JEM0 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav3n-3A0A0G2JEM0 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav3n-3A0A0G2JEM0 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
Trav3n-3A0A0G2JEM0 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav3n-3A0A0G2JEM0 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav3n-3A0A0G2JEM0 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav3n-3A0A0G2JEM0 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC15.58■□□□□ 0.09
Trav3n-3A0A0G2JEM0 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trav3n-3A0A0G2JEM0 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav3n-3A0A0G2JEM0 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC15.57■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav3n-3A0A0G2JEM0 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC15.55■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC15.54■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Trav3n-3A0A0G2JEM0 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Trav3n-3A0A0G2JEM0 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Pkd1-207ENSMUST00000228550 1050 ntBASIC15.53■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC15.53■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav3n-3A0A0G2JEM0 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC15.52■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav3n-3A0A0G2JEM0 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav3n-3A0A0G2JEM0 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav3n-3A0A0G2JEM0 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav3n-3A0A0G2JEM0 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Trav3n-3A0A0G2JEM0 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav3n-3A0A0G2JEM0 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav3n-3A0A0G2JEM0 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav3n-3A0A0G2JEM0 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav3n-3A0A0G2JEM0 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
Trav3n-3A0A0G2JEM0 AC167019.3-201ENSMUST00000228225 1266 ntBASIC15.51■□□□□ 0.07
Trav3n-3A0A0G2JEM0 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav3n-3A0A0G2JEM0 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC15.51■□□□□ 0.07
Trav3n-3A0A0G2JEM0 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav3n-3A0A0G2JEM0 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav3n-3A0A0G2JEM0 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms